| Protein: | ROK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 564 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROK1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..510] | [65..579] |
|
|
0.0 | [2..511] | [108..621] |
|
|
0.0 | [2..510] | [65..579] |
|
|
0.0 | [2..510] | [65..579] |
|
|
0.0 | [2..511] | [108..621] |
|
|
0.0 | [16..552] | [62..611] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MDIFRVLTRG ASVKKESGPK AKAADYSVIN GNDENHKEDN NESQIVKELD FFRNKRIISK 60
61 VEDDREKTTE NDSPNKEEKS GNDDGLIKPV ITNTV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.471 | a.39.1 | EF-hand |
| View | Download | 0.201 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.471 | a.39.1 | EF-hand |
| View | Download | 0.201 | a.5.6 | Hypothetical protein MTH1615 |
|
Region A: Residues: [96-340] |
1 11 21 31 41 51
| | | | | |
1 EASALRKSYK GNVSGIDIPL PIGSFEDLIS RFSFDKRLLN NLIENGFTEP TPIQCECIPV 60
61 ALNNRDVLAC GPTGSGKTLA FLIPLVQQII DDKQTAGLKG LIISPTKELA NQIFIECFKL 120
121 SYKIFLEKKR PLQVALLSKS LGAKLKNKVV SDKKYDIIIS TPLRLIDVVK NEALDLSKVK 180
181 HLIFDEADKL FDKTFVEQSD DILSACREPS LRKAMFSATI PSNVEEIAQS IMMDPVRVII 240
241 GHKEA
|
| Detection Method: | |
| Confidence: | 539.228787 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [341-497] |
1 11 21 31 41 51
| | | | | |
1 ANTNIEQKLI FCGNEEGKLI AIRQLVQEGE FKPPIIIFLE SITRAKALYH ELMYDRINVD 60
61 VIHAERTALQ RDRIIERFKT GELWCLICTD VLARGIDFKG VNLVINYDVP GSSQAYVHRI 120
121 GRTGRGGRSG KAITFYTKQD SVAIKPIINV MKQSGCE
|
| Detection Method: | |
| Confidence: | 539.228787 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-564] |
1 11 21 31 41 51
| | | | | |
1 VSEWMDKMAK MTRKEKESIK NGKAHKERKQ ITTVPKMDKA KRRRQQEMIA ASKRRKNEEL 60
61 SKKHFSK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.528 | 0.001 | nucleolus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.696 | 0.001 | nucleolus | a.4.1 | Homeodomain-like |
| View | Download | 0.617 | 0.001 | nucleolus | a.77.1 | DEATH domain |
| View | Download | 0.950 | 0.001 | nucleolus | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.406 | 0.001 | nucleolus | a.64.1 | Saposin |
| View | Download | 0.394 | 0.001 | nucleolus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.377 | 0.001 | nucleolus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.369 | 0.001 | nucleolus | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.369 | 0.001 | nucleolus | a.4.1 | Homeodomain-like |
| View | Download | 0.365 | 0.001 | nucleolus | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.361 | 0.001 | nucleolus | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.345 | 0.001 | nucleolus | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.342 | 0.001 | nucleolus | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.335 | 0.001 | nucleolus | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.327 | 0.001 | nucleolus | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.319 | 0.001 | nucleolus | a.64.1 | Saposin |
| View | Download | 0.302 | 0.001 | nucleolus | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.298 | 0.001 | nucleolus | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.297 | 0.001 | nucleolus | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.279 | 0.001 | nucleolus | a.4.1 | Homeodomain-like |
| View | Download | 0.270 | 0.001 | nucleolus | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.269 | 0.001 | nucleolus | a.4.11 | RNA polymerase subunit RPB10 |
| View | Download | 0.265 | 0.001 | nucleolus | a.159.2 | FF domain |
| View | Download | 0.261 | 0.001 | nucleolus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.260 | 0.001 | nucleolus | a.39.1 | EF-hand |
| View | Download | 0.255 | 0.001 | nucleolus | a.112.1 | Description not found. |
| View | Download | 0.253 | 0.001 | nucleolus | a.39.1 | EF-hand |
| View | Download | 0.251 | 0.001 | nucleolus | a.4.1 | Homeodomain-like |
| View | Download | 0.246 | 0.001 | nucleolus | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.236 | 0.001 | nucleolus | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.231 | 0.001 | nucleolus | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.231 | 0.001 | nucleolus | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.227 | 0.001 | nucleolus | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.221 | 0.001 | nucleolus | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.216 | 0.001 | nucleolus | a.60.1 | SAM/Pointed domain |
| View | Download | 0.211 | 0.001 | nucleolus | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.207 | 0.001 | nucleolus | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.205 | 0.001 | nucleolus | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.202 | 0.001 | nucleolus | a.65.1 | Annexin |
| View | Download | 0.201 | 0.001 | nucleolus | a.4.3 | ARID-like |
