| Protein: | ROK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 564 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROK1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..510] | [65..579] |
|
|
0.0 | [2..511] | [108..621] |
|
|
0.0 | [2..510] | [65..579] |
|
|
0.0 | [2..510] | [65..579] |
|
|
0.0 | [2..511] | [108..621] |
|
|
0.0 | [16..552] | [62..611] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MDIFRVLTRG ASVKKESGPK AKAADYSVIN GNDENHKEDN NESQIVKELD FFRNKRIISK 60
61 VEDDREKTTE NDSPNKEEKS GNDDGLIKPV ITNTV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [96-340] |
1 11 21 31 41 51
| | | | | |
1 EASALRKSYK GNVSGIDIPL PIGSFEDLIS RFSFDKRLLN NLIENGFTEP TPIQCECIPV 60
61 ALNNRDVLAC GPTGSGKTLA FLIPLVQQII DDKQTAGLKG LIISPTKELA NQIFIECFKL 120
121 SYKIFLEKKR PLQVALLSKS LGAKLKNKVV SDKKYDIIIS TPLRLIDVVK NEALDLSKVK 180
181 HLIFDEADKL FDKTFVEQSD DILSACREPS LRKAMFSATI PSNVEEIAQS IMMDPVRVII 240
241 GHKEA
|
| Detection Method: | |
| Confidence: | 539.228787 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [341-497] |
1 11 21 31 41 51
| | | | | |
1 ANTNIEQKLI FCGNEEGKLI AIRQLVQEGE FKPPIIIFLE SITRAKALYH ELMYDRINVD 60
61 VIHAERTALQ RDRIIERFKT GELWCLICTD VLARGIDFKG VNLVINYDVP GSSQAYVHRI 120
121 GRTGRGGRSG KAITFYTKQD SVAIKPIINV MKQSGCE
|
| Detection Method: | |
| Confidence: | 539.228787 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-564] |
1 11 21 31 41 51
| | | | | |
1 VSEWMDKMAK MTRKEKESIK NGKAHKERKQ ITTVPKMDKA KRRRQQEMIA ASKRRKNEEL 60
61 SKKHFSK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.950 | 0.001 | nucleolus | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
