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View Structure Prediction Details

Protein: RMD9
Organism: Saccharomyces cerevisiae
Length: 646 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMD9.

Description E-value Query
Range		 Subject
Range
gi|51830325 - gi|51830325|gb|AAU09725.1| YGL107C [Saccharomyces cerevisiae]
 1288.0 [0..1] [646..1]
RMD9L_CANGA - Protein RMD9-like, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0...
RMD9L_CANGA - Protein RMD9-like, mitochondrial OS=Candida glabrata GN=CAGL0K07007g PE=3 SV=1
 953.0 [0..76] [641..96]
RMD9_KLULA - Protein RMD9, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC ...
RMD9_KLULA - Protein RMD9, mitochondrial OS=Kluyveromyces lactis GN=RMD9 PE=3 SV=1
 627.0 [0..40] [641..61]
RMD9_ASHGO - Protein RMD9, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-...
RMD9_ASHGO - Protein RMD9, mitochondrial OS=Ashbya gossypii GN=RMD9 PE=3 SV=1
 526.0 [0..78] [646..90]
RMD9_DEBHA - Protein RMD9, mitochondrial precursor - Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
gi|50423947, gi|... - gi|50423947|ref|XP_460558.1| hypothetical protein DEHA0F04851g [Debaryomyces hansenii CBS767], gi|49...
 241.0 [0..142] [638..139]
RMD9_CANAL - Protein RMD9, mitochondrial OS=Candida albicans GN=RMD9 PE=3 SV=1
RMD9_CANAL - Protein RMD9, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RMD9 PE=3 SV=1
 176.0 [0..158] [532..143]

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Predicted Domain #1
Region A:
Residues: [1-124] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLRRNAVRS LKTMEISVSN VVNSGSIAML RGKLANVVLS DRTYHSSPIF HKNVPKGVLD  60
   61 KKNGREQRKT EQNVFNVDPA SPWRHELLSF DECVSSALKY STTPLQNTYK RIGNNQLNKN 120
  121 PSFA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [125-395] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFWDSMGRAM ELYYSLRESP DFNAYRVSRL IHLLHNGLRS TRDQLVKLSR KPDYDSQSFH  60
   61 KEMMNFLCNS LKDISDDILI GKVSVSGYGA THLLTSFKEL SFDDDCIRIW EASKNLSDET 120
  121 TSQAFQEPKV VGFMLPLLYA KTRSLTEPNE LYNQIIQSKE FIHPNLYSGL IKVFIKAEDY 180
  181 EKALSLFGQL CEKAEVRNYG YLIETHLSFI GDSKNLTLAE SFFDKIINDE MPYKIILQVS 240
  241 TVNSFLQNIW KAQNDFDHVY RIWEKAVKFY G

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 7.06
Match:
Description: No description for 1qoyA was found.

Predicted Domain #3
Region A:
Residues: [396-646] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTVNPGILSS LNNTFFTIFF ENYINDNING FRKLQEIITF YSGVKKIDEP FFNVMLTRAS  60
   61 IWHERSIIDF IDKNYTLYHI PRTIISYRIL LKSLGSIDNT NNEEILDRWL ELVKKLNELG 120
  121 QQYIANADLS ALRDATVVWS QSKRDEKVFS AKAKGTPATT TTTEDDIKVP KPLENLKNED 180
  181 STSNSEDRIE LYLKILKRYT PYFRATKQVY RYTTGCAESY PILNEYLSGY SDLSAEDIPV 240
  241 PQLHSFIAKE Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle