| Protein: | RMD9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 646 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMD9.
| Description | E-value | Query Range |
Subject Range |
|
|
1288.0 | [0..1] | [646..1] |
|
|
953.0 | [0..76] | [641..96] |
|
|
627.0 | [0..40] | [641..61] |
|
|
526.0 | [0..78] | [646..90] |
|
|
241.0 | [0..142] | [638..139] |
|
|
176.0 | [0..158] | [532..143] |
|
Region A: Residues: [1-124] |
1 11 21 31 41 51
| | | | | |
1 MMLRRNAVRS LKTMEISVSN VVNSGSIAML RGKLANVVLS DRTYHSSPIF HKNVPKGVLD 60
61 KKNGREQRKT EQNVFNVDPA SPWRHELLSF DECVSSALKY STTPLQNTYK RIGNNQLNKN 120
121 PSFA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.524 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.438 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.438 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.373 | d.15.5 | Staphylokinase/streptokinase |
| View | Download | 0.373 | d.15.5 | Staphylokinase/streptokinase |
| View | Download | 0.351 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.351 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.351 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.351 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.347 | d.14.1 | Ribosomal protein S5 domain 2-like |
|
Region A: Residues: [125-395] |
1 11 21 31 41 51
| | | | | |
1 MFWDSMGRAM ELYYSLRESP DFNAYRVSRL IHLLHNGLRS TRDQLVKLSR KPDYDSQSFH 60
61 KEMMNFLCNS LKDISDDILI GKVSVSGYGA THLLTSFKEL SFDDDCIRIW EASKNLSDET 120
121 TSQAFQEPKV VGFMLPLLYA KTRSLTEPNE LYNQIIQSKE FIHPNLYSGL IKVFIKAEDY 180
181 EKALSLFGQL CEKAEVRNYG YLIETHLSFI GDSKNLTLAE SFFDKIINDE MPYKIILQVS 240
241 TVNSFLQNIW KAQNDFDHVY RIWEKAVKFY G
|
| Detection Method: | |
| Confidence: | 7.06 |
| Match: | |
| Description: | No description for 1qoyA was found. |
|
Region A: Residues: [396-646] |
1 11 21 31 41 51
| | | | | |
1 NTVNPGILSS LNNTFFTIFF ENYINDNING FRKLQEIITF YSGVKKIDEP FFNVMLTRAS 60
61 IWHERSIIDF IDKNYTLYHI PRTIISYRIL LKSLGSIDNT NNEEILDRWL ELVKKLNELG 120
121 QQYIANADLS ALRDATVVWS QSKRDEKVFS AKAKGTPATT TTTEDDIKVP KPLENLKNED 180
181 STSNSEDRIE LYLKILKRYT PYFRATKQVY RYTTGCAESY PILNEYLSGY SDLSAEDIPV 240
241 PQLHSFIAKE Q
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
