| Protein: | NUP145 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1317 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP145.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..1309] | [1..1309] |
|
|
0.0 | [601..1239] | [1047..1711] |
|
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0.0 | [796..1237] | [8..497] |
|
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0.0 | [804..1237] | [1..482] |
|
Region A: Residues: [1-156] |
1 11 21 31 41 51
| | | | | |
1 MFNKSVNSGF TFGNQNTSTP TSTPAQPSSS LQFPQKSTGL FGNVNVNANT STPSPSGGLF 60
61 NANSNANSIS QQPANNSLFG NKPAQPSGGL FGATNNTTSK SAGSLFGNNN ATANSTGSTG 120
121 LFSGSNNIAS STQNGGLFGN SNNNNITSTT QNGGLF
|
| Detection Method: |  |
| Confidence: | 5.69897 |
| Match: | 1deqA_ |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [157-390] |
1 11 21 31 41 51
| | | | | |
1 GKPTTTPAGA GGLFGNSSST NSTTGLFGSN NTQSSTGIFG QKPGASTTGG LFGNNGASFP 60
61 RSGETTGTMS TNPYGINISN VPMAVADMPR SITSSLSDVN GKSDAEPKPI ENRRTYSFSS 120
121 SVSGNAPLPL ASQSSLVSRL STRLKATQKS TSPNEIFSPS YSKPWLNGAG SAPLVDDFFS 180
181 SKMTSLAPNE NSIFPQNGFN FLSSQRADLT ELRKLKIDSN RSAAKKLKLL SGTP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [391-1049] |
1 11 21 31 41 51
| | | | | |
1 AITKKHMQDE QDSSENEPIA NADSVTNIDR KENRDNNLDN TYLNGKEQSN NLNKQDGENT 60
61 LQHEKSSSFG YWCSPSPEQL ERLSLKQLAA VSNFVIGRRG YGCITFQHDV DLTAFTKSFR 120
121 EELFGKIVIF RSSKTVEVYP DEATKPMIGH GLNVPAIITL ENVYPVDKKT KKPMKDTTKF 180
181 AEFQVFDRKL RSMREMNYIS YNPFGGTWTF KVNHFSIWGL VNEEDAEIDE DDLSKQEDGG 240
241 EQPLRKVRTL AQSKPSDKEV ILKTDGTFGT LSGKDDSIVE EKAYEPDLSD ADFEGIEASP 300
301 KLDVSKDWVE QLILAGSSLR SVFATSKEFD GPCQNEIDLL FSECNDEIDN AKLIMKERRF 360
361 TASYTFAKFS TGSMLLTKDI VGKSGVSIKR LPTELQRKFL FDDVYLDKEI EKVTIEARKS 420
421 NPYPQISESS LLFKDALDYM EKTSSDYNLW KLSSILFDPV SYPYKTDNDQ VKMALLKKER 480
481 HCRLTSWIVS QIGPEIEEKI RNSSNEIEQI FLYLLLNDVV RASKLAIESK NGHLSVLISY 540
541 LGSNDPRIRD LAELQLQKWS TGGCSIDKNI SKIYKLLSGS PFEGLFSLKE LESEFSWLCL 600
601 LNLTLCYGQI DEYSLESLVQ SHLDKFSLPY DDPIGVIFQL YAANENTEKL YKEVRQRTN
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1050-1234] |
1 11 21 31 41 51
| | | | | |
1 ALDVQFCWYL IQTLRFNGTR VFSKETSDEA TFAFAAQLEF AQLHGHSLFV SCFLNDDKAA 60
61 EDTIKRLVMR EITLLRASTN DHILNRLKIP SQLIFNAQAL KDRYEGNYLS EVQNLLLGSS 120
121 YDLAEMAIVT SLGPRLLLSN NPVQNNELKT LREILNEFPD SERDKWSVSI NVFEVYLKLV 180
181 LDNVE
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1235-1317] |
1 11 21 31 41 51
| | | | | |
1 TQETIDSLIS GMKIFYDQYK HCREVAACCN VMSQEIVSKI LEKNNPSIGD SKAKLLELPL 60
61 GQPEKAYLRG EFAQDLMKCT YKI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.552 | a.24.4 | Hemerythrin |
| View | Download | 0.530 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.540 | a.46.1 | Methionine synthase domain |
| View | Download | 0.488 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.552 | a.24.4 | Hemerythrin |
| View | Download | 0.540 | a.46.1 | Methionine synthase domain |
| View | Download | 0.535 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.535 | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.530 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.527 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.485 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.468 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.461 | a.112.1 | Description not found. |
| View | Download | 0.449 | a.24.3 | Cytochromes |
| View | Download | 0.434 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.420 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.416 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.407 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.382 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.379 | a.4.1 | Homeodomain-like |
| View | Download | 0.378 | c.55.4 | Translational machinery components |
| View | Download | 0.375 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.368 | a.17.1 | p8-MTCP1 |
| View | Download | 0.359 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.354 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.350 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.345 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.333 | a.7.1 | Spectrin repeat |
| View | Download | 0.329 | a.4.2 | Methylated DNA-protein cysteine methyltransferase, C-terminal domain |
| View | Download | 0.324 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.308 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.304 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.300 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.299 | a.47.2 | t-snare proteins |
| View | Download | 0.299 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.297 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.293 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.285 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.278 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.277 | a.24.3 | Cytochromes |
| View | Download | 0.268 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.267 | d.58.49 | YajQ-like |
| View | Download | 0.267 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.265 | a.65.1 | Annexin |
| View | Download | 0.259 | a.3.1 | Cytochrome c |
| View | Download | 0.259 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.256 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.251 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.247 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.242 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.240 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.238 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.234 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.223 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.223 | a.19.1 | Fertilization protein |
| View | Download | 0.223 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.219 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.216 | d.202.1 | Transcription factor NusA, N-terminal domain |
| View | Download | 0.216 | a.74.1 | Cyclin-like |
| View | Download | 0.211 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.209 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.208 | a.74.1 | Cyclin-like |
| View | Download | 0.201 | a.158.1 | F-box domain |
