| Protein: | NUP145 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1317 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP145.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1309] | [1..1309] |
|
|
0.0 | [601..1239] | [1047..1711] |
|
|
0.0 | [796..1237] | [8..497] |
|
|
0.0 | [804..1237] | [1..482] |
|
Region A: Residues: [1-156] |
1 11 21 31 41 51
| | | | | |
1 MFNKSVNSGF TFGNQNTSTP TSTPAQPSSS LQFPQKSTGL FGNVNVNANT STPSPSGGLF 60
61 NANSNANSIS QQPANNSLFG NKPAQPSGGL FGATNNTTSK SAGSLFGNNN ATANSTGSTG 120
121 LFSGSNNIAS STQNGGLFGN SNNNNITSTT QNGGLF
|
| Detection Method: |  |
| Confidence: | 5.69897 |
| Match: | 1deqA_ |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [157-390] |
1 11 21 31 41 51
| | | | | |
1 GKPTTTPAGA GGLFGNSSST NSTTGLFGSN NTQSSTGIFG QKPGASTTGG LFGNNGASFP 60
61 RSGETTGTMS TNPYGINISN VPMAVADMPR SITSSLSDVN GKSDAEPKPI ENRRTYSFSS 120
121 SVSGNAPLPL ASQSSLVSRL STRLKATQKS TSPNEIFSPS YSKPWLNGAG SAPLVDDFFS 180
181 SKMTSLAPNE NSIFPQNGFN FLSSQRADLT ELRKLKIDSN RSAAKKLKLL SGTP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [391-1049] |
1 11 21 31 41 51
| | | | | |
1 AITKKHMQDE QDSSENEPIA NADSVTNIDR KENRDNNLDN TYLNGKEQSN NLNKQDGENT 60
61 LQHEKSSSFG YWCSPSPEQL ERLSLKQLAA VSNFVIGRRG YGCITFQHDV DLTAFTKSFR 120
121 EELFGKIVIF RSSKTVEVYP DEATKPMIGH GLNVPAIITL ENVYPVDKKT KKPMKDTTKF 180
181 AEFQVFDRKL RSMREMNYIS YNPFGGTWTF KVNHFSIWGL VNEEDAEIDE DDLSKQEDGG 240
241 EQPLRKVRTL AQSKPSDKEV ILKTDGTFGT LSGKDDSIVE EKAYEPDLSD ADFEGIEASP 300
301 KLDVSKDWVE QLILAGSSLR SVFATSKEFD GPCQNEIDLL FSECNDEIDN AKLIMKERRF 360
361 TASYTFAKFS TGSMLLTKDI VGKSGVSIKR LPTELQRKFL FDDVYLDKEI EKVTIEARKS 420
421 NPYPQISESS LLFKDALDYM EKTSSDYNLW KLSSILFDPV SYPYKTDNDQ VKMALLKKER 480
481 HCRLTSWIVS QIGPEIEEKI RNSSNEIEQI FLYLLLNDVV RASKLAIESK NGHLSVLISY 540
541 LGSNDPRIRD LAELQLQKWS TGGCSIDKNI SKIYKLLSGS PFEGLFSLKE LESEFSWLCL 600
601 LNLTLCYGQI DEYSLESLVQ SHLDKFSLPY DDPIGVIFQL YAANENTEKL YKEVRQRTN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1050-1234] |
1 11 21 31 41 51
| | | | | |
1 ALDVQFCWYL IQTLRFNGTR VFSKETSDEA TFAFAAQLEF AQLHGHSLFV SCFLNDDKAA 60
61 EDTIKRLVMR EITLLRASTN DHILNRLKIP SQLIFNAQAL KDRYEGNYLS EVQNLLLGSS 120
121 YDLAEMAIVT SLGPRLLLSN NPVQNNELKT LREILNEFPD SERDKWSVSI NVFEVYLKLV 180
181 LDNVE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1235-1317] |
1 11 21 31 41 51
| | | | | |
1 TQETIDSLIS GMKIFYDQYK HCREVAACCN VMSQEIVSKI LEKNNPSIGD SKAKLLELPL 60
61 GQPEKAYLRG EFAQDLMKCT YKI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
