| Protein: | RNA15 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 296 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNA15.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-55 | [2..274] | [24..272] |
|
|
4.0E-54 | [2..274] | [24..273] |
|
|
6.0E-54 | [2..273] | [35..283] |
|
|
2.0E-53 | [2..273] | [30..278] |
|
Region A: Residues: [1-96] |
1 11 21 31 41 51
| | | | | |
1 MNRQSGVNAG VQNNPPSRVV YLGSIPYDQT EEQILDLCSN VGPVINLKMM FDPQTGRSKG 60
61 YAFIEFRDLE SSASAVRNLN GYQLGSRFLK CGYSSN
|
| Detection Method: |  |
| Confidence: | 104.9897 |
| Match: | 1fxlA_ |
| Description: | Hu antigen D (Hud) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 5.15097136329571 | bayes_pls_golite062009 |
| mRNA binding | 4.05281507540116 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| 3.4479220904723 | bayes_pls_golite062009 | |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| single-stranded RNA binding | 1.46469774223879 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 1.36691748240059 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| snRNA binding | 0.73428616955527 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
|
Region A: Residues: [97-202] |
1 11 21 31 41 51
| | | | | |
1 SDISGVSQQQ QQQYNNINGN NNNNGNNNNN SNGPDFQNSG NANFLSQKFP ELPSGIDVNI 60
61 NMTTPAMMIS SELAKKPKEV QLKFLQKFQE WTRAHPEDAV SLLELC
|
| Detection Method: | |
| Confidence: | 104.9897 |
| Match: | 1fxlA_ |
| Description: | Hu antigen D (Hud) |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.11788426448287 | bayes_pls_golite062009 |
| mRNA binding | 4.06818972936809 | bayes_pls_golite062009 |
| single-stranded RNA binding | 3.03728178586535 | bayes_pls_golite062009 |
| nucleic acid binding | 2.68703240185319 | bayes_pls_golite062009 |
| poly(A) RNA binding | 2.66269581586161 | bayes_pls_golite062009 |
| poly-purine tract binding | 2.20136693536924 | bayes_pls_golite062009 |
| binding | 2.16883445607402 | bayes_pls_golite062009 |
| eukaryotic initiation factor 4G binding | 2.1187709602541 | bayes_pls_golite062009 |
| catalytic activity | 0.287695754348243 | bayes_pls_golite062009 |
| protein self-association | 0.283882327957323 | bayes_pls_golite062009 |
| protein binding | 0.159640166509248 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.04158498339604 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.0311121204326499 | bayes_pls_golite062009 |
|
Region A: Residues: [203-296] |
1 11 21 31 41 51
| | | | | |
1 PQLSFVTAEL LLTNGICKVD DLIPLASRPQ EEASATNNNS VNEVVDPAVL NKQKELLKQV 60
61 LQLNDSQISI LPDDERMAIW DLKQKALRGE FGAF
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 1g9lA_ |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
