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View Structure Prediction Details

Protein: STT3
Organism: Saccharomyces cerevisiae
Length: 718 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STT3.

Description E-value Query
Range
Subject
Range
gi|73989883 - gi|73989883|ref|XP_542747.2| PREDICTED: similar to source of immunodominant MHC-associated peptides ...
857.0 [0..12] [714..68]
STT3B - STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
gi|114585828 - gi|114585828|ref|XP_001166939.1| PREDICTED: source of immunodominant MHC-associated peptides isoform...
854.0 [0..12] [714..68]
gi|61651673, gi|... - gi|74225294|dbj|BAE31580.1| unnamed protein product [Mus musculus], gi|74216930|dbj|BAE26582.1| unna...
854.0 [0..12] [714..65]

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Predicted Domain #1
Region A:
Residues: [1-660]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDRSCVLS VFQTILKLVI FVAIFGAAIS SRLFAVIKFE SIIHEFDPWF NYRATKYLVN  60
   61 NSFYKFLNWF DDRTWYPLGR VTGGTLYPGL MTTSAFIWHA LRNWLGLPID IRNVCVLFAP 120
  121 LFSGVTAWAT YEFTKEIKDA SAGLLAAGFI AIVPGYISRS VAGSYDNEAI AITLLMVTFM 180
  181 FWIKAQKTGS IMHATCAALF YFYMVSAWGG YVFITNLIPL HVFLLILMGR YSSKLYSAYT 240
  241 TWYAIGTVAS MQIPFVGFLP IRSNDHMAAL GVFGLIQIVA FGDFVKGQIS TAKFKVIMMV 300
  301 SLFLILVLGV VGLSALTYMG LIAPWTGRFY SLWDTNYAKI HIPIIASVSE HQPVSWPAFF 360
  361 FDTHFLIWLF PAGVFLLFLD LKDEHVFVIA YSVLCSYFAG VMVRLMLTLT PVICVSAAVA 420
  421 LSKIFDIYLD FKTSDRKYAI KPAALLAKLI VSGSFIFYLY LFVFHSTWVT RTAYSSPSVV 480
  481 LPSQTPDGKL ALIDDFREAY YWLRMNSDED SKVAAWWDYG YQIGGMADRT TLVDNNTWNN 540
  541 THIAIVGKAM ASPEEKSYEI LKEHDVDYVL VIFGGLIGFG GDDINKFLWM IRISEGIWPE 600
  601 EIKERDFYTA EGEYRVDARA SETMRNSLLY KMSYKDFPQL FNGGQATDRV RQQMITPLDV 660
  661 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 279.070581
Match: PF02516
Description: Oligosaccharyl transferase STT3 subunit

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [661-718]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPLDYFDEVF TSENWMVRIY QLKKDDAQGR TLRDVGELTR SSTKTRRSIK RPELGLRV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle