| Protein: | PDR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1068 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1068] | [1..1063] |
|
|
5.0E-91 | [5..557] | [27..538] |
|
|
5.0E-36 | [2..271] | [237..497] |
|
Region A: Residues: [1-111] |
1 11 21 31 41 51
| | | | | |
1 MRGLTPKNGV HIETGPDTES SADSSNFSTG FSGKIRKPRS KVSKACDNCR KRKIKCNGKF 60
61 PCASCEIYSC ECTFSTRQGG ARIKNLHKTS LEGTTVQVKE ETDSSSTSFS N
|
| Detection Method: |  |
| Confidence: | 36.274545 |
| Match: | 1d66A_ |
| Description: | Gal4; CD2-Gal4 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
| DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
| nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
| transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.98081393153291 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.93914501897006 | bayes_pls_golite062009 |
| binding | 2.91929847152301 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 2.44382866473054 | bayes_pls_golite062009 |
| transcription activator activity | 2.24483536326713 | bayes_pls_golite062009 |
|
Region A: Residues: [112-420] |
1 11 21 31 41 51
| | | | | |
1 PQRCTDGPCA VEQPTKFFEN FKLGGRSSGD NSGSDGKNDD DVNRNGFYED DSESQATLTS 60
61 LQTTLKNLKE MAHLGTHVTS AIESIELQIS DLLKRWEPKV RTKELATTKF YPNKSIETQL 120
121 MKNKYCDVVH LTRYAAWSNN KKDQDTSSQP LIDEIFGLYS PFQFLSLQGI GKCFQNYRSK 180
181 SKCEIFPRTA KETIYIMLRF FDVCFHHINQ GCVSIANPLE NYLQKMNLLP STPSSISSAG 240
241 SPNTAHTKSH VALVINHLPQ PFVRNITGIS NSELLSEMNN DISMFGILLK MLDMHKNSYQ 300
301 NFLMEITSN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [421-574] |
1 11 21 31 41 51
| | | | | |
1 PSVAKNTQSI DVLQEFIHYC QAGEALIALC YSYYNSTLYN YVDFTCDITH LEQLLYFLDL 60
61 LFWLSEIYGF EKVLNVAVHF VSRVGLSRWE FYVGLDENFA ERRRNLWWKA FYFEKTLASK 120
121 LGYPSNIDDS KINCLLPKNF RDVGFLDNRD FIEN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [575-1068] |
1 11 21 31 41 51
| | | | | |
1 VHLVRRSEAF DNMCISDLKY YGELAVLQIV SHFSSSVLFN EKFTSIRNTS KPSVVREKLL 60
61 FEVLEIFNET EMKYDAIKEQ TGKLFDIAFS KDSTELKVSR EDKIMASKFV LFYEHHFCRM 120
121 VNESDNIVAR LCVHRRPSIL IENLKIYLHK IYKSWTDMNK ILLDFDNDYS VYRSFAHYSI 180
181 SCIILVSQAF SVAEFIKVND VVNMIRVFKR FLDIKIFSEN ETNEHVFNSQ SFKDYTRAFS 240
241 FLTIVTRIML LAYGESSSTN LDVISKYIDE NAPDLKGIIE LVLDTNSCAY RFLLEPVQKS 300
301 GFHLTVSQML KNRKFQEPLM SNEDNKQMKH NSGKNLNPDL PSLKTGTSCL LNGIESPQLP 360
361 FNGRSAPSPV RNNSLPEFAQ LPSFRSLSVS DMINPDYAQP TNGQNNTQVQ SNKPINAQQQ 420
421 IPTSVQVPFM NTNEINNNNN NNNNNKNNIN NINNNNSNNF SATSFNLGTL DEFVNNGDLE 480
481 DLYSILWSDV YPDS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [467-557] |
1 11 21 31 41 51
| | | | | |
1 DITHLEQLLY FLDLLFWLSE IYGFEKVLNV AVHFVSRVGL SRWEFYVGLD ENFAERRRNL 60
61 WWKAFYFEKT LASKLGYPSN IDDSKINCLL P
|
| Detection Method: | |
| Confidence: | 17.420216 |
| Match: | PF04082.9 |
| Description: | No description for PF04082.9 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [558-798] |
1 11 21 31 41 51
| | | | | |
1 KNFRDVGFLD NRDFIENVHL VRRSEAFDNM CISDLKYYGE LAVLQIVSHF SSSVLFNEKF 60
61 TSIRNTSKPS VVREKLLFEV LEIFNETEMK YDAIKEQTGK LFDIAFSKDS TELKVSREDK 120
121 IMASKFVLFY EHHFCRMVNE SDNIVARLCV HRRPSILIEN LKIYLHKIYK SWTDMNKILL 180
181 DFDNDYSVYR SFAHYSISCI ILVSQAFSVA EFIKVNDVVN MIRVFKRFLD IKIFSENETN 240
241 E
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [799-1068] |
1 11 21 31 41 51
| | | | | |
1 HVFNSQSFKD YTRAFSFLTI VTRIMLLAYG ESSSTNLDVI SKYIDENAPD LKGIIELVLD 60
61 TNSCAYRFLL EPVQKSGFHL TVSQMLKNRK FQEPLMSNED NKQMKHNSGK NLNPDLPSLK 120
121 TGTSCLLNGI ESPQLPFNGR SAPSPVRNNS LPEFAQLPSF RSLSVSDMIN PDYAQPTNGQ 180
181 NNTQVQSNKP INAQQQIPTS VQVPFMNTNE INNNNNNNNN NKNNINNINN NNSNNFSATS 240
241 FNLGTLDEFV NNGDLEDLYS ILWSDVYPDS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
