| Protein: | CDH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 566 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDH1.
| Description | E-value | Query Range |
Subject Range |
|
|
620.0 | [0..16] | [564..1165] |
|
|
609.0 | [0..5] | [566..922] |
|
|
598.0 | [0..5] | [552..1060] |
|
|
588.0 | [0..2] | [542..967] |
|
|
581.0 | [0..18] | [555..605] |
|
|
574.0 | [0..3] | [565..835] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MSTNLNPFMN NTPSSSPLKG SESKRVSKRP ISSSSSASLL SSPSRRSRPS TVYGDRYIPS 60
61 RTDIDFNSIV SISSMASVPA LNPSSTEDQV EYQKERQAHE TYNTLLKNEL FGEMLSKDTV 120
121
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.334 | b.88.1 | Mss4-like |
| View | Download | 0.312 | b.88.1 | Mss4-like |
| View | Download | 0.299 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.281 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.272 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.272 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.255 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.229 | d.6.1 | Prion-like |
| View | Download | 0.218 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.208 | a.118.9 | ENTH/VHS domain |
|
Region A: Residues: [121-458] |
1 11 21 31 41 51
| | | | | |
1 GSESSIDRIK NTRPSTRGNV HAENTTRHGY ELERVSTPPP EAAGLEEFSP HSTPVTPRRL 60
61 FTSQQDEITR PSSNSVRGAS LLTYQQRKGR RLSAASLLQS QFFDSMSPVR PDSKQLLLSP 120
121 GKQFRQIAKV PYRVLDAPSL ADDFYYSLID WSSTDVLAVA LGKSIFLTDN NTGDVVHLCD 180
181 TENEYTSLSW IGAGSHLAVG QANGLVEIYD VMKRKCIRTL SGHIDRVACL SWNNHVLTSG 240
241 SRDHRILHRD VRMPDPFFET IESHTQEVCG LKWNVADNKL ASGGNDNVVH VYEGTSKSPI 300
301 LTFDEHKAAV KAMAWSPHKR GVLATGGGTA DRRLKIWN
|
| Detection Method: | |
| Confidence: | 63.221849 |
| Match: | 1erjA |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [459-566] |
1 11 21 31 41 51
| | | | | |
1 VNTSIKMSDI DSGSQICNMV WSKNTNELVT SHGYSKYNLT LWDCNSMDPI AILKGHSFRV 60
61 LHLTLSNDGT TVVSGAGDET LRYWKLFDKP KAKVQPNSLI FDAFNQIR
|
| Detection Method: | |
| Confidence: | 87.69897 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
