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View Structure Prediction Details

Protein: PUG1
Organism: Saccharomyces cerevisiae
Length: 303 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUG1.

Description E-value Query
Range
Subject
Range
gi|2133112, gi|7... - gi|730689|sp|P40113.1|RTM1_YEAST RecName: Full=Protein RTM1, gi|551465|gb|AAA81533.1| RTM1 gene prod...
2.0E-94 [1..301] [1..307]
gi|16904126 - gi|16904126|gb|AAL30767.1|AF435426_1 parasitic phase-specific protein PSP-1 [Coccidioides posadasii]
1.0E-67 [12..287] [5..259]
YEO2_SCHPO - Uncharacterized protein C17G6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G6...
SPAC17G6.02c - RTA1-like protein
4.0E-51 [11..283] [7..256]
gi|6473968 - gi|6473968|dbj|BAA87202.1| Hypothetical protein [Schizosaccharomyces pombe]
3.0E-29 [155..283] [1..142]
gi|2072027 - gi|2072027|gb|AAB53652.1| symbiosis-related protein [Laccaria bicolor]
3.0E-9 [224..269] [12..57]

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Predicted Domain #1
Region A:
Residues: [1-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTDSGFVL YHYTPSKAAA IVFVVLFIIM TVIFAVQTLY AARKSSKALK NNPFESSDDK  60
   61 VDSLEDAEYK QLKITPTVFA FIPFFTGCIM EAVGYIGRAL SSSNPERTTP YIIQSVLLLV 120
  121 APALIAATIY MIFGRLLHVM RCQSLILISA RFGTTFFVVG DVFSFFLQAA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [171-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGLMSKAGS TKTGSGLITA GLFVQVIFFG FFIINEIRFT VNVKRRCLFY EDISRKWIFV  60
   61 NATLLLSSML ILLRSIVRIV EFIQGFNGYI ISHEYFIYVF DAVPMLLVII AFSVGSFFGN 120
  121 VFDVIKECQT LSN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.856 N/A N/A a.24.14 FAT domain of focal adhesion kinase


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle