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View Structure Prediction Details

Protein: PUG1
Organism: Saccharomyces cerevisiae
Length: 303 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUG1.

Description E-value Query
Range
Subject
Range
gi|2133112, gi|7... - gi|730689|sp|P40113.1|RTM1_YEAST RecName: Full=Protein RTM1, gi|551465|gb|AAA81533.1| RTM1 gene prod...
2.0E-94 [1..301] [1..307]
gi|16904126 - gi|16904126|gb|AAL30767.1|AF435426_1 parasitic phase-specific protein PSP-1 [Coccidioides posadasii]
1.0E-67 [12..287] [5..259]
YEO2_SCHPO - Uncharacterized protein C17G6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G6...
SPAC17G6.02c - RTA1-like protein
4.0E-51 [11..283] [7..256]
gi|6473968 - gi|6473968|dbj|BAA87202.1| Hypothetical protein [Schizosaccharomyces pombe]
3.0E-29 [155..283] [1..142]
gi|2072027 - gi|2072027|gb|AAB53652.1| symbiosis-related protein [Laccaria bicolor]
3.0E-9 [224..269] [12..57]

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Predicted Domain #1
Region A:
Residues: [1-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTDSGFVL YHYTPSKAAA IVFVVLFIIM TVIFAVQTLY AARKSSKALK NNPFESSDDK  60
   61 VDSLEDAEYK QLKITPTVFA FIPFFTGCIM EAVGYIGRAL SSSNPERTTP YIIQSVLLLV 120
  121 APALIAATIY MIFGRLLHVM RCQSLILISA RFGTTFFVVG DVFSFFLQAA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [171-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGLMSKAGS TKTGSGLITA GLFVQVIFFG FFIINEIRFT VNVKRRCLFY EDISRKWIFV  60
   61 NATLLLSSML ILLRSIVRIV EFIQGFNGYI ISHEYFIYVF DAVPMLLVII AFSVGSFFGN 120
  121 VFDVIKECQT LSN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.856 N/A N/A a.24.14 FAT domain of focal adhesion kinase
View Download 0.854 N/A N/A a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.841 N/A N/A a.48.1 N-terminal domain of cbl (N-cbl)
View Download 0.825 N/A N/A a.24.14 FAT domain of focal adhesion kinase
View Download 0.824 N/A N/A f.17.1 F1F0 ATP synthase subunit C


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle