| Protein: | OXA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 402 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OXA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..402] | [1..402] |
|
|
2.0E-91 | [40..397] | [19..369] |
|
|
6.0E-80 | [28..371] | [44..382] |
|
|
1.0E-79 | [18..377] | [99..453] |
|
|
1.0E-79 | [18..377] | [39..393] |
|
|
1.0E-78 | [16..397] | [4..377] |
|
|
4.0E-72 | [97..402] | [84..394] |
|
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7.0E-72 | [45..323] | [275..537] |
|
|
5.0E-71 | [5..367] | [22..411] |
|
Region A: Residues: [1-92] |
1 11 21 31 41 51
| | | | | |
1 MFKLTSRLVT SRFAASSRLA TARTIVLPRP HPSWISFQAK RFNSTGPNAN DVSEIQTQLP 60
61 SIDELTSSAP SLSASTSDLI ANTTQTVGEL SS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.592 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.551 | a.101.1 | Uteroglobin-like |
| View | Download | 0.543 | a.24.4 | Hemerythrin |
| View | Download | 0.340 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.592 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.401 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.551 | a.101.1 | Uteroglobin-like |
| View | Download | 0.543 | a.24.4 | Hemerythrin |
| View | Download | 0.340 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.401 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.340 | d.94.1 | HPr-like |
| View | Download | 0.275 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.269 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.263 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.253 | a.151.1 | Glutamyl tRNA-reductase dimerization domain |
| View | Download | 0.252 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.241 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.228 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.226 | a.39.1 | EF-hand |
| View | Download | 0.223 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.217 | a.46.1 | Methionine synthase domain |
| View | Download | 0.216 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.214 | a.74.1 | Cyclin-like |
| View | Download | 0.207 | a.77.1 | DEATH domain |
| View | Download | 0.207 | d.197.1 | Protein-L-isoaspartyl O-methyltransferase, C-terminal domain |
|
Region A: Residues: [93-335] |
1 11 21 31 41 51
| | | | | |
1 HIGYLNSIGL AQTWYWPSDI IQHVLEAVHV YSGLPWWGTI AATTILIRCL MFPLYVKSSD 60
61 TVARNSHIKP ELDALNNKLM STTDLQQGQL VAMQRKKLLS SHGIKNRWLA APMLQIPIAL 120
121 GFFNALRHMA NYPVDGFANQ GVAWFTDLTQ ADPYLGLQVI TAAVFISFTR LGGETGAQQF 180
181 SSPMKRLFTI LPIISIPATM NLSSAVVLYF AFNGAFSVLQ TMILRNKWVR SKLKITEVAK 240
241 PRT
|
| Detection Method: | |
| Confidence: | 10.337242 |
| Match: | PF02096 |
| Description: | 60Kd inner membrane protein |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [336-402] |
1 11 21 31 41 51
| | | | | |
1 PIAGASPTEN MGIFQSLKHN IQKARDQAER RQLMQDNEKK LQESFKEKRQ NSKIKIVHKS 60
61 NFINNKK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.704 | a.17.1 | p8-MTCP1 |
| View | Download | 0.643 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.559 | a.4.1 | Homeodomain-like |
| View | Download | 0.643 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.542 | a.126.1 | Serum albumin-like |
| View | Download | 0.777 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.704 | a.17.1 | p8-MTCP1 |
| View | Download | 0.777 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.564 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.559 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.527 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.490 | a.2.3 | Chaperone J-domain |
| View | Download | 0.481 | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.475 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.472 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.455 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.453 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.438 | a.30.1 | ROP protein |
| View | Download | 0.434 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.422 | a.46.1 | Methionine synthase domain |
| View | Download | 0.411 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.407 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.407 | a.64.1 | Saposin |
| View | Download | 0.387 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.386 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.386 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.370 | a.112.1 | Description not found. |
| View | Download | 0.364 | a.2.7 | tRNA-binding arm |
| View | Download | 0.354 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.350 | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.344 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.341 | a.101.1 | Uteroglobin-like |
| View | Download | 0.332 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.328 | a.4.1 | Homeodomain-like |
| View | Download | 0.324 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.320 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.319 | b.88.1 | Mss4-like |
| View | Download | 0.312 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.309 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.301 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.293 | d.58.5 | GlnB-like |
| View | Download | 0.288 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.286 | a.3.1 | Cytochrome c |
| View | Download | 0.284 | a.64.1 | Saposin |
| View | Download | 0.283 | a.4.1 | Homeodomain-like |
| View | Download | 0.281 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.272 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.270 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.262 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.257 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.255 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.255 | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.251 | d.58.12 | eEF-1beta-like |
| View | Download | 0.251 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.247 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.242 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.240 | a.2.3 | Chaperone J-domain |
| View | Download | 0.231 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.231 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.227 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.218 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.216 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.213 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.211 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.203 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.203 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.202 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
