YRC Public Data Repository - Protein Structure Prediction

Protein:	OXA1
Organism:	Saccharomyces cerevisiae
Length:	402 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OXA1.

Description	E-value	Query Range	Subject Range
gi\|190405713 - gi\|190405713\|gb\|EDV08980.1\| inner membrane protein OXA1, mitochondrial precursor [Saccharomyces cere... OXA1_YEAST - Mitochondrial inner membrane protein OXA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... gi\|151944872 - gi\|151944872\|gb\|EDN63131.1\| cytochrome oxidase activity [Saccharomyces cerevisiae YJM789] OXA1 - Mitochondrial inner membrane insertase, mediates the insertion of both mitochondrial- and nuclear-en...	0.0	[1..402]	[1..402]
OXA1_KAZSE - Mitochondrial inner membrane protein OXA1 OS=Kazachstania servazzii GN=OXA1 PE=3 SV=1	2.0E-91	[40..397]	[19..369]
gi\|12841194 - gi\|12841194\|dbj\|BAB25113.1\| unnamed protein product [Mus musculus]	6.0E-80	[28..371]	[44..382]
gi\|2546979, gi\|4... - gi\|4826880\|ref\|NP_005006.1\| oxidase (cytochrome c) assembly 1-like [Homo sapiens], gi\|2546979\|emb\|CA...	1.0E-79	[18..377]	[99..453]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-79	[18..377]	[39..393]
gi\|44986093 - gi\|44986093\|gb\|AAS54633.1\| AGR143Wp [Ashbya gossypii ATCC 10895] gi\|12003128, gi\|... - gi\|45201239\|ref\|NP_986809.1\| AGR143Wp [Ashbya gossypii ATCC 10895], gi\|44986093\|gb\|AAS54633.1\| AGR14...	1.0E-78	[16..397]	[4..377]
oxa102 - mitochondrial inner membrane translocase Oxa102 OXA12_SCHPO - Mitochondrial inner membrane protein oxa1-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	4.0E-72	[97..402]	[84..394]
gi\|165926088, gi... - gi\|165926088\|ref\|ZP_02221920.1\| inner membrane protein OxaA [Yersinia pestis biovar Orientalis str. ... gi\|166009619, gi... - gi\|166009619\|ref\|ZP_02230517.1\| inner membrane protein OxaA [Yersinia pestis biovar Antiqua str. E19... gi\|166205510, gi... - gi\|166213212\|ref\|ZP_02239247.1\| inner membrane protein OxaA [Yersinia pestis biovar Antiqua str. B42... gi\|167401618, gi... - gi\|167401618\|ref\|ZP_02307112.1\| inner membrane protein OxaA [Yersinia pestis biovar Antiqua str. UG0... YIDC_YERPE - Membrane protein insertase YidC OS=Yersinia pestis GN=yidC PE=3 SV=1 gi\|166958256, gi... - gi\|167422864\|ref\|ZP_02314617.1\| inner membrane protein OxaA [Yersinia pestis biovar Orientalis str. ... gi\|167055547, gi... - gi\|167425533\|ref\|ZP_02317286.1\| inner membrane protein OxaA [Yersinia pestis biovar Mediaevalis str.... gi\|169752984, gi... - gi\|170026450\|ref\|YP_001722955.1\| putative inner membrane protein translocase component YidC [Yersini... gi\|186700516, gi... - gi\|186897490\|ref\|YP_001874602.1\| putative inner membrane protein translocase component YidC [Yersini... gi\|150260964, gi... - gi\|150260964\|ref\|ZP_01917692.1\| probable membrane protein [Yersinia pestis CA88-4125], gi\|149290372\|... gi\|145601170, gi... - gi\|145601170\|ref\|YP_001165246.1\| putative inner membrane protein translocase component YidC [Yersini... Q663S7\|Q663S7_YERPS - Oxa1 family transporter precursor - Yersinia pseudotuberculosis gi\|162421152, gi... - gi\|162421152\|ref\|YP_001608452.1\| putative inner membrane protein translocase component YidC [Yersini... gi\|22127984, gi\|... - gi\|22127984\|ref\|NP_671407.1\| putative inner membrane protein translocase component YidC [Yersinia pe... gi\|51591514, gi\|... - gi\|51598232\|ref\|YP_072423.1\| putative inner membrane protein translocase component YidC [Yersinia ps... gi\|45443732, gi\|... - gi\|45443732\|ref\|NP_995271.1\| putative inner membrane protein translocase component YidC [Yersinia pe... gi\|229678777, gi... - gi\|229904659\|ref\|ZP_04519770.1\| cytoplasmic insertase into membrane protein, Sec system [Yersinia pe... gi\|15981991, gi\|... - gi\|218931078\|ref\|YP_002348953.1\| putative inner membrane protein translocase component YidC [Yersini... gi\|229839809, gi... - gi\|229839809\|ref\|ZP_04459968.1\| cytoplasmic insertase into membrane protein, Sec system [Yersinia pe... gi\|117675554, gi... - gi\|77630955\|ref\|ZP_00793541.1\| COG0706: Preprotein translocase subunit YidC [Yersinia pseudotubercul... gi\|165939954, gi... - gi\|89101595\|ref\|ZP_01174321.1\| COG0706: Preprotein translocase subunit YidC [Yersinia pestis biovar ... gi\|229841894, gi... - gi\|229841894\|ref\|ZP_04462050.1\| cytoplasmic insertase into membrane protein, Sec system [Yersinia pe... gi\|108782050, gi... - gi\|108810137\|ref\|YP_654053.1\| putative inner membrane protein translocase component YidC [Yersinia p... gi\|229700209, gi... - gi\|229896771\|ref\|ZP_04511934.1\| cytoplasmic insertase into membrane protein, Sec system [Yersinia pe...	7.0E-72	[45..323]	[275..537]
gi\|14334120 - gi\|14334120\|gb\|AAK60543.1\|AF382189_1 OXA1 [Podospora anserina]	5.0E-71	[5..367]	[22..411]

Back

Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKLTSRLVT SRFAASSRLA TARTIVLPRP HPSWISFQAK RFNSTGPNAN DVSEIQTQLP  60
   61 SIDELTSSAP SLSASTSDLI ANTTQTVGEL SS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [93-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HIGYLNSIGL AQTWYWPSDI IQHVLEAVHV YSGLPWWGTI AATTILIRCL MFPLYVKSSD  60
   61 TVARNSHIKP ELDALNNKLM STTDLQQGQL VAMQRKKLLS SHGIKNRWLA APMLQIPIAL 120
  121 GFFNALRHMA NYPVDGFANQ GVAWFTDLTQ ADPYLGLQVI TAAVFISFTR LGGETGAQQF 180
  181 SSPMKRLFTI LPIISIPATM NLSSAVVLYF AFNGAFSVLQ TMILRNKWVR SKLKITEVAK 240
  241 PRT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.337242
Match:	PF02096
Description:	60Kd inner membrane protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [336-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIAGASPTEN MGIFQSLKHN IQKARDQAER RQLMQDNEKK LQESFKEKRQ NSKIKIVHKS  60
   61 NFINNKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits