| Protein: | JHD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 492 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for JHD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..492] | [1..492] |
|
|
0.0 | [6..434] | [64..436] |
|
|
7.0E-96 | [28..434] | [4..356] |
|
|
2.0E-88 | [17..442] | [250..649] |
|
|
2.0E-87 | [88..433] | [24..373] |
|
|
3.0E-80 | [35..446] | [29..441] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MQDPNICQHC QLKDNPGALI WVKCDSCPQW VHVKCVPLKR IHYSNLTSSE VLSYPNSAKQ 60
61 IKSYRCPNHK EGEYLTAYAL ITQKGKRQRN KEN
|
| Detection Method: |  |
| Confidence: | 5.036212 |
| Match: | PF00628 |
| Description: | PHD-finger |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.88491358085672 | bayes_pls_golite062009 |
| histone binding | 1.71382360735986 | bayes_pls_golite062009 |
| histone demethylase activity | 1.42799906837292 | bayes_pls_golite062009 |
| protein binding | 1.37530480805073 | bayes_pls_golite062009 |
| methylated histone residue binding | 0.66098532413825 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 0.238070109642748 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 0.238070109642748 | bayes_pls_golite062009 |
| histone demethylase activity (H3-K4 specific) | 0.212310512021675 | bayes_pls_golite062009 |
| protein kinase activity | 0.0340504798365963 | bayes_pls_golite062009 |
|
Region A: Residues: [94-284] |
1 11 21 31 41 51
| | | | | |
1 PEDSHINKRY NFRKKKLLDY IALNEGESKR DKMNHPHKES FMKSFEKWKN GSNIINAADF 60
61 AEKFDNIDVP YKIIDPLNSG VYVPNVGTDN GCLTVNYITE MIGEDYHVDV MDVQSQMNEN 120
121 WNLGSWNEYF TNTEPDRRDR IRNVISLEVS NIEGLELERP TAVRQNDLVD KIWSFNGHLE 180
181 KVNGEKAEEN D
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [285-435] |
1 11 21 31 41 51
| | | | | |
1 PKPKVTKYIL MSVKDAYTDF HLDFAGTSVY YNVISGQKKF LLFPPTQSNI DKYIEWSLKE 60
61 DQNSVFLGDI LEDGIAMELD AGDLFMIPAG YIHAVYTPVD SLVFGGNFLT IRDLETHLKI 120
121 VEIEKLTKVP RRFTFPKFDQ VMGKLCEYLA L
|
| Detection Method: | |
| Confidence: | 2.958607 |
| Match: | PF02373 |
| Description: | JmjC domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [436-492] |
1 11 21 31 41 51
| | | | | |
1 DKNKITSDVS DGDLLSRTTN CAIQSLHAYV IKPEVKYKPL NFTSKKHLAK ALADLIS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.282 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.274 | a.4.1 | Homeodomain-like |
| View | Download | 0.238 | a.4.13 | Sigma3 and sigma4 domains of RNA polymerase sigma factors |
| View | Download | 0.235 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.229 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.227 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.225 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.218 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
