YRC Public Data Repository - Protein Structure Prediction

Protein:	BIM1
Organism:	Saccharomyces cerevisiae
Length:	344 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIM1.

Description	E-value	Query Range	Subject Range
BIM1 - Microtubule-binding protein that together with Kar9p makes up the cortical microtubule capture site ... gi\|190405577 - gi\|190405577\|gb\|EDV08844.1\| protein BIM1 [Saccharomyces cerevisiae RM11-1a] gi\|151944725 - gi\|151944725\|gb\|EDN62984.1\| microtubule binding protein [Saccharomyces cerevisiae YJM789] BIM1_YEAST - Protein BIM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIM1 PE=1 SV=1	0.0	[1..344]	[1..344]
gi\|12751130 - gi\|12751130\|gb\|AAK07556.1\| EBF3-L [Homo sapiens]	0.0	[6..297]	[16..281]
MARE1_MOUSE - Microtubule-associated protein RP/EB family member 1 OS=Mus musculus GN=Mapre1 PE=1 SV=3	4.0E-99	[3..283]	[11..257]
Eb1-PE - The gene Eb1 is referred to in FlyBase by the symbol Dmel\Eb1 (CG3265, FBgn0027066). It is a protein... gi\|220950444 - gi\|220950444\|gb\|ACL87765.1\| Eb1-PE [synthetic construct]	3.0E-98	[6..291]	[14..289]
gi\|4838546 - gi\|4838546\|gb\|AAD31035.1\| EB1 [Ictalurus punctatus]	2.0E-95	[3..291]	[11..257]
gi\|46250052, gi\|... - gi\|46250052\|gb\|AAH68630.1\| XEB1B protein [Xenopus laevis], gi\|18478500\|dbj\|BAB84523.1\| xEB1B [Xenopu...	3.0E-93	[3..291]	[11..294]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGIGESRT ELLTWLNGLL NLNYKKIEEC GTGAAYCQIM DSIYGDLPMN RVKFNATAEY  60
   61 EFQTNYKILQ SCFSRHGIEK TVYVDKLIRC KFQDNLEFLQ WLKKHWIRHK DESVYDPDAR 120
  121 RK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.853872
Match:	PF00307
Description:	Calponin homology (CH) domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [123-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YRPIITNNSA TKPRTVSNPT TAKRSSSTGT GSAMSGGLAT RHSSLGINGS RKTSVTQGQL  60
   61 VAIQAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [189-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTKSQETIGS LNEEIEQYKG TVSTLEIERE FYFNKLRDIE ILVHTTQDLI NEGVYKFNDE  60
   61 TITGHGNGNG GALLRFVKKV ESILYATAEG FEMNDGEDEL NDKNLGEHGT VPNQGGYANS 120
  121 NGEVNGNEGS NHDVIMQNDE GEVGVSNNLI IDEETF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.200659
Match:	PF03271
Description:	EB1-like C-terminal motif

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits