| Protein: | LCD1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 747 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCD1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..747] | [1..747] |
|
Region A: Residues: [1-194] |
1 11 21 31 41 51
| | | | | |
1 MRRETVGEFS SDDDDDILLE LGTRPPRFTQ IPPSSAALQT QIPTTLEVTT TTLNNKQSKN 60
61 DNQLVNQLNK AQGEASMLRD KINFLNIERE KEKNIQAVKV NELQVKHLQE LAKLKQELQK 120
121 LEDEKKFLQM EARGKSKREV ITNVKPPSTT LSTNTNTITP DSSSVAIEAK PQSPQSKKRK 180
181 ISDNLLKKNM VPLN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [195-284] |
1 11 21 31 41 51
| | | | | |
1 PNRIIPDETS LFLESILLHQ IIGADLSTIE ILNRLKLDYI TEFKFKNFVI AKGAPIGKSI 60
61 VSLLLRCKKT LTLDRFIDTL LEDIAVLIKE
|
| Detection Method: | |
| Confidence: | 8.0 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.96084803796407 | bayes_pls_golite062009 |
| protein transporter activity | 2.47190066960729 | bayes_pls_golite062009 |
| nucleic acid binding | 1.67566088591721 | bayes_pls_golite062009 |
| protein binding | 1.61131270705552 | bayes_pls_golite062009 |
| transcription regulator activity | 0.845665181662967 | bayes_pls_golite062009 |
| DNA binding | 0.806448013051712 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 0.795583320946118 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.66737572008694 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.65168535727044 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.384349606267362 | bayes_pls_golite062009 |
| structural molecule activity | 0.279533827088985 | bayes_pls_golite062009 |
| transcription factor activity | 0.131703572961748 | bayes_pls_golite062009 |
|
Region A: Residues: [285-566] |
1 11 21 31 41 51
| | | | | |
1 ISVHPNESKL AVPFLVALMY QIVQFRPSAT HNLALKDCFL FICDLIRIYH HVLKVPIHES 60
61 NMNLHVEPQI FQYELIDYLI ISYSFDLLEG ILRVLQSHPK QTYMEFFDEN ILKSFEFVYK 120
121 LALTISYKPM VNVIFSAVEV VNIITSIILN MDNSSDLKSL ISGSWWRDCI TRLYALLEKE 180
181 IKSGDVYNEN VDTTTLHMSK YHDFFGLIRN IGDNELGGLI SKLIYTDRLQ SVPRVISKED 240
241 IGMDSDKFTA PIIGYKMEKW LLKLKDEVLN IFENLLMIYG DD
|
| Detection Method: | |
| Confidence: | 8.0 |
| Match: | 1h6kA |
| Description: | CBP80, 80KDa nuclear cap-binding protein |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.96084803796407 | bayes_pls_golite062009 |
| protein transporter activity | 2.47190066960729 | bayes_pls_golite062009 |
| nucleic acid binding | 1.67566088591721 | bayes_pls_golite062009 |
| protein binding | 1.61131270705552 | bayes_pls_golite062009 |
| transcription regulator activity | 0.845665181662967 | bayes_pls_golite062009 |
| DNA binding | 0.806448013051712 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 0.795583320946118 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.66737572008694 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.65168535727044 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.384349606267362 | bayes_pls_golite062009 |
| structural molecule activity | 0.279533827088985 | bayes_pls_golite062009 |
| transcription factor activity | 0.131703572961748 | bayes_pls_golite062009 |
|
Region A: Residues: [567-747] |
1 11 21 31 41 51
| | | | | |
1 ATIVNGEMLI HSSKFLSREQ ALMIERYVGQ DSPNLDLRCH LIEHTLTIIY RLWKDHFKQL 60
61 REEQIKQVES QLIMSLWRFL VCQTETVTAN EREMRDHRHL VDSLHDLTIK DQASYYEDAF 120
121 EDLPEYIEEE LKMQLNKRTG RIMQVKYDEK FQEMARTILE SKSFDLTTLE EADSLYISMG 180
181 L
|
| Detection Method: | |
| Confidence: | 7.09 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
Matching Structure (courtesy of the PDB): |
|
