YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS17B
Organism:	Saccharomyces cerevisiae
Length:	136 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS17B.

Description	E-value	Query Range	Subject Range
RS17_MOUSE - 40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2 RS17_FELCA - 40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2 RS17_PIG - 40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=1 SV=3 RS17_CANLF - 40S ribosomal protein S17 OS=Canis lupus familiaris GN=RPS17 PE=2 SV=2 gi\|151554859 - gi\|151554859\|gb\|AAI48019.1\| RPS17 protein [Bos taurus] gi\|149722214 - gi\|149722214\|ref\|XP_001502882.1\| PREDICTED: similar to ribosomal protein S17 [Equus caballus] gi\|149632223 - gi\|149632223\|ref\|XP_001509615.1\| PREDICTED: similar to ribosomal protein S17 [Ornithorhynchus anatin... ENSOCUP000000205... - pep:novel chromosome:oryCun2:10:40065951:40066358:1 gene:ENSOCUG00000005304 transcript:ENSOCUT000000... RS17_CRIGR - 40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2	3.0E-53	[1..133]	[1..129]
gi\|90085371 - gi\|90085371\|dbj\|BAE91426.1\| unnamed protein product [Macaca fascicularis] ENSPTRT00000013602 - null gi\|124000383, gi... - gi\|60655893\|gb\|AAX32510.1\| ribosomal protein S17 [synthetic construct], gi\|124000383\|gb\|ABM87700.1\| ... ENSCJAT000000442... - null, null RPS17 - ribosomal protein S17 ENSMMUG000000113... - null, null	3.0E-53	[1..133]	[1..129]
RS17_ICTPU - 40S ribosomal protein S17 OS=Ictalurus punctatus GN=rps17 PE=2 SV=3 gi\|225704156, gi... - gi\|225704156\|gb\|ACO07924.1\| 40S ribosomal protein S17 [Oncorhynchus mykiss], gi\|225703602\|gb\|ACO0764... gi\|226442854, gi... - gi\|226442854\|ref\|NP_001139966.1\| 40S ribosomal protein S17 [Salmo salar], gi\|223672323\|gb\|ACN12343.1...	5.0E-53	[1..133]	[1..129]
gi\|71200, gi\|206... - gi\|8394215\|ref\|NP_058848.1\| ribosomal protein S17 [Rattus norvegicus], pir\|\|R4RT17 ribosomal protein...	1.0E-52	[1..133]	[1..129]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-52	[2..133]	[1..128]
gi\|950111 - gi\|950111\|gb\|AAB01668.1\| ribosomal protein S17	3.0E-52	[2..133]	[1..128]
RS17_COTJA - 40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3 gi\|29149613 - gi\|29149613\|gb\|AAO46161.1\| ribosomal protein S17 [Coturnix coturnix] RS17_CHICK - 40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3 gi\|197127577, gi... - gi\|197127578\|gb\|ACH44076.1\| putative ribosomal protein S17 variant 1 [Taeniopygia guttata], gi\|19712...	5.0E-50	[7..133]	[1..123]
RS17_SPOFR - 40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3 gi\|54609319, gi\|... - gi\|54609319\|gb\|AAV34875.1\| ribosomal protein S17 [Bombyx mori], gi\|112984008\|ref\|NP_001037267.1\| rib...	6.0E-48	[1..135]	[1..131]
gi\|220959396 - gi\|220959396\|gb\|ACL92241.1\| RpS17-PB [synthetic construct] gi\|190653948, gi... - gi\|194867879\|ref\|XP_001972165.1\| GG14040 [Drosophila erecta], gi\|190653948\|gb\|EDV51191.1\| GG14040 [D... gi\|193919609, gi... - gi\|195127087\|ref\|XP_002008000.1\| GI13264 [Drosophila mojavensis], gi\|193919609\|gb\|EDW18476.1\| GI1326... gi\|194118815, gi... - gi\|195326309\|ref\|XP_002029872.1\| GM24873 [Drosophila sechellia], gi\|194118815\|gb\|EDW40858.1\| GM24873... RpS17-PB - The gene Ribosomal protein S17 is referred to in FlyBase by the symbol Dmel\RpS17 (CG3922, FBgn00055... gi\|194196270, gi... - gi\|195589033\|ref\|XP_002084261.1\| GD12925 [Drosophila simulans], gi\|194196270\|gb\|EDX09846.1\| GD12925 ...	1.0E-47	[1..136]	[1..131]
RS17B_YEAST - 40S ribosomal protein S17-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS17B PE=1 ... gi\|151942412 - gi\|151942412\|gb\|EDN60768.1\| ribosomal protein S17B [Saccharomyces cerevisiae YJM789] RPS17B - Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similari...	7.0E-47	[1..136]	[1..136]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVRTKTVK RASKALIERY YPKLTLDFQT NKRLCDEIAT IQSKRLRNKI AGYTTHLMKR  60
   61 IQKGPVRGIS FKLQEEERER KDQYVPEVSA LDLSRSNGVL NVDNQTSDLV KSLGLKLPLS 120
  121 VINVSAQRDR RYRKRN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	92.920819
Match:	PF00833
Description:	Ribosomal S17

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [68-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GISFKLQEEE RERKDQYVPE VSALDLSRSN GVLNVDNQTS DLVKSLGLKL PLSVINVSAQ  60
   61 RDRRYRKRN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.823909
Match:	PF00833.9
Description:	No description for PF00833.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits