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Protein Overview: RpS17-PB

General Information:
Name(s) found: RpS17-PB / FBpp0076207 [FlyBase]
Description(s) found:
Found 28 descriptions.
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  • The gene Ribosomal protein S17 is referred to in FlyBase by the symbol Dmel\RpS17 (CG3922, FBgn0005533). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3L:9421789..9422917. It has the cytological map location 67B5. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 12 alleles are reported. The phenotype of these alleles is annotated with: macrochaeta. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 131 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic small ribosomal subunit [ISS]
    ribosome [NAS]
    Biological Process: translation [ISS]
    Molecular Function: structural constituent of ribosome [ISS][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVRTKTVK KAAKVIIEKY YTRLTLDFHT NKRICEEVAI IPTKPLRNKI AGYVTHLMGR  60
   61 LRHSQVRGIS IKLQEEERER RDNYVPAVSA LEQDIIEVDA DTKEMLKLLD FHNIRGLQLT 120
  121 QPNTNNFGRR N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..69] PSI-BLAST 16.69897 Solution structure of ribosomal protein S17E from Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target TT802 / Ontario Center for Structural Proteomics Target Mth0803
    2 View Details [70..131] Pfam 4.275724 No description for PF00833.9 was found. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  8.46684512737821 bayes_pls_golite062009
  • structural molecule activity
    		•  7.90461593765642 bayes_pls_golite062009
  • RNA binding
    		•  1.03893460013625 bayes_pls_golite062009
  • binding
    		•  0.91487893588143 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.644832948797119 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle