YRC Public Data Repository - Protein Structure Prediction

Protein:	MRP20
Organism:	Saccharomyces cerevisiae
Length:	263 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP20.

Description	E-value	Query Range	Subject Range
MRP20 - Mitochondrial ribosomal protein of the large subunit gi\|190404659 - gi\|190404659\|gb\|EDV07926.1\| 60S ribosomal protein L41, mitochondrial precursor [Saccharomyces cerevi... gi\|207346333 - gi\|207346333\|gb\|EDZ72858.1\| YDR405Wp-like protein [Saccharomyces cerevisiae AWRI1631] RM41_YEAST - 54S ribosomal protein L41, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151942378 - gi\|151942378\|gb\|EDN60734.1\| YmL41 [Saccharomyces cerevisiae YJM789]	4.0E-94	[1..263]	[1..263]
RM23_RAT - 39S ribosomal protein L23, mitochondrial OS=Rattus norvegicus GN=Mrpl23 PE=2 SV=1	9.0E-26	[69..209]	[2..139]
RM23_MOUSE - 39S ribosomal protein L23, mitochondrial OS=Mus musculus GN=Mrpl23 PE=1 SV=1	2.0E-25	[69..209]	[2..139]
gi\|48478716, gi\|... - gi\|48478750\|ref\|YP_024358.1\| ribosomal protein L23 [Saccharum hybrid cultivar SP-80-3280], gi\|484787... RK23_MAIZE - 50S ribosomal protein L23, chloroplastic OS=Zea mays GN=rpl23-A PE=3 SV=1 RK23_SACOF - 50S ribosomal protein L23, chloroplastic OS=Saccharum officinarum GN=rpl23-A PE=3 SV=1 RK23B_SORBI - 50S ribosomal protein L23-B, chloroplastic OS=Sorghum bicolor GN=rpl23-B PE=3 SV=1 RK23_SACHY - 50S ribosomal protein L23, chloroplastic OS=Saccharum hybrid GN=rpl23-A PE=3 SV=1	2.0E-24	[84..175]	[4..90]
gi\|710569, gi\|710565 - gi\|710569\|gb\|AAD15253.1\| ribosomal protein L23 [Oryza sativa], gi\|710565\|gb\|AAA84593.1\| ribosomal pr...	5.0E-24	[84..175]	[4..90]
gi\|15829057 - gi\|15829057\|ref\|NP_326417.1\| 50S ribosomal protein L23 [Mycoplasma pulmonis UAB CTIP] gi\|25394580, gi\|... - pir\|\|B90585 50S ribosomal protein L23 [imported] - Mycoplasma pulmonis (strain UAB CTIP), gi\|140900...	5.0E-23	[88..207]	[8..121]
gi\|134286971, gi... - gi\|139390219\|ref\|YP_001123791.1\| ribosomal protein L23 [Lobularia maritima], gi\|139390194\|ref\|YP_001... gi\|139389992, gi... - gi\|139390015\|ref\|YP_001123614.1\| ribosomal protein L23 [Draba nemorosa], gi\|139389992\|ref\|YP_0011235... gi\|134286705, gi... - gi\|139389868\|ref\|YP_001123528.1\| ribosomal protein L23 [Crucihimalaya wallichii], gi\|139389843\|ref\|Y... gi\|134286439, gi... - gi\|139389707\|ref\|YP_001123263.1\| ribosomal protein L23 [Arabis hirsuta], gi\|139389684\|ref\|YP_0011232... gi\|134286354, gi... - gi\|139389481\|ref\|YP_001123177.1\| ribosomal protein L23 [Olimarabidopsis pumila], gi\|139389460\|ref\|YP... RK23_SINAL - 50S ribosomal protein L23, chloroplastic OS=Sinapis alba GN=rpl23 PE=3 SV=1 gi\|134287061, gi... - gi\|139389161\|ref\|YP_001123878.1\| ribosomal protein L23 [Nasturtium officinale], gi\|139389138\|ref\|YP_... gi\|139388952, gi... - gi\|139388977\|ref\|YP_001123703.1\| ribosomal protein L23 [Lepidium virginicum], gi\|139388952\|ref\|YP_00... RK23_ARATH - 50S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana GN=rpl23-A PE=3 SV=1 gi\|139387294, gi... - gi\|139387319\|ref\|YP_001123439.1\| ribosomal protein L23 [Capsella bursa-pastoris], gi\|139387294\|ref\|Y...	4.0E-22	[84..171]	[4..86]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-22	[84..171]	[4..86]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLTVGTKN MLYPLQKTLA VGSCKPEQVP IRSLASVVES SSKILDKSGS DREVDINVSE  60
   61 KIYKWTKAGI EQGKEHFKVG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNKVYFPKAR IILLRPNAKH TPYQAKFIVP KSFNKLDLRD YLYHIYGLRA MNITTQLLHG  60
   61 KFNRMNLQTT RFREPQIKKM TIEMEEPFIW PEEPRPDENS FW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	1lnrR_
Description:	No description for 1lnrR_ was found.

Predicted Domain #3

Region A:
Residues: [183-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSTTPDNMEK YREERLNCLG SDANKPGTAF DGVVGPYERV AQPFIPRFLK REIDNKRERH  60
   61 AAELQRADKL IALNRYIEDL H

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits