| Protein: | MRP20 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 263 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP20.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-94 | [1..263] | [1..263] |
|
|
9.0E-26 | [69..209] | [2..139] |
|
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2.0E-25 | [69..209] | [2..139] |
|
|
2.0E-24 | [84..175] | [4..90] |
|
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5.0E-24 | [84..175] | [4..90] |
|
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5.0E-23 | [88..207] | [8..121] |
|
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4.0E-22 | [84..171] | [4..86] |
|
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7.0E-22 | [84..171] | [4..86] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MPRLTVGTKN MLYPLQKTLA VGSCKPEQVP IRSLASVVES SSKILDKSGS DREVDINVSE 60
61 KIYKWTKAGI EQGKEHFKVG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.545 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.507 | a.118.1 | ARM repeat |
| View | Download | 0.631 | a.2.3 | Chaperone J-domain |
| View | Download | 0.638 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.637 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.490 | a.1.1 | Globin-like |
| View | Download | 0.447 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.445 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.444 | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.428 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.424 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.405 | a.46.1 | Methionine synthase domain |
| View | Download | 0.383 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.348 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.342 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.331 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.329 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.325 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.308 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.303 | a.112.1 | Description not found. |
| View | Download | 0.302 | a.4.1 | Homeodomain-like |
| View | Download | 0.295 | a.47.2 | t-snare proteins |
| View | Download | 0.294 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.293 | a.26.1 | 4-helical cytokines |
| View | Download | 0.292 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.292 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.286 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.271 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.255 | a.24.4 | Hemerythrin |
| View | Download | 0.254 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.244 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.235 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.234 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.233 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.231 | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.227 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.225 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.224 | a.1.1 | Globin-like |
| View | Download | 0.222 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.220 | a.2.7 | tRNA-binding arm |
| View | Download | 0.219 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.210 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.209 | a.4.1 | Homeodomain-like |
| View | Download | 0.208 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.205 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.204 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.204 | c.9.1 | Barstar (barnase inhibitor) |
| View | Download | 0.202 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.200 | a.54.1 | Domain of early E2A DNA-binding protein, ADDBP |
|
Region A: Residues: [81-182] |
1 11 21 31 41 51
| | | | | |
1 GNKVYFPKAR IILLRPNAKH TPYQAKFIVP KSFNKLDLRD YLYHIYGLRA MNITTQLLHG 60
61 KFNRMNLQTT RFREPQIKKM TIEMEEPFIW PEEPRPDENS FW
|
| Detection Method: | |
| Confidence: | 20.09691 |
| Match: | 1lnrR_ |
| Description: | No description for 1lnrR_ was found. |
|
Region A: Residues: [183-263] |
1 11 21 31 41 51
| | | | | |
1 DSTTPDNMEK YREERLNCLG SDANKPGTAF DGVVGPYERV AQPFIPRFLK REIDNKRERH 60
61 AAELQRADKL IALNRYIEDL H
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.682 | a.7.7 | BAG domain |
| View | Download | 0.527 | a.7.8 | GAT domain |
| View | Download | 0.583 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.566 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.504 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.492 | a.46.1 | Methionine synthase domain |
| View | Download | 0.471 | a.47.2 | t-snare proteins |
| View | Download | 0.453 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.423 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.417 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.408 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.383 | d.58.49 | YajQ-like |
| View | Download | 0.375 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.368 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.368 | a.4.7 | Ribosomal protein L11, C-terminal domain |
| View | Download | 0.361 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.355 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.353 | a.28.1 | ACP-like |
| View | Download | 0.341 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.339 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.321 | a.118.1 | ARM repeat |
| View | Download | 0.320 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.316 | a.2.3 | Chaperone J-domain |
| View | Download | 0.310 | a.2.3 | Chaperone J-domain |
| View | Download | 0.308 | d.58.48 | MTH1187-like |
| View | Download | 0.300 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.300 | a.28.1 | ACP-like |
| View | Download | 0.294 | a.130.1 | Chorismate mutase II |
| View | Download | 0.291 | a.77.1 | DEATH domain |
| View | Download | 0.286 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.282 | a.42.1 | MDM2 |
| View | Download | 0.276 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.275 | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.267 | a.3.1 | Cytochrome c |
| View | Download | 0.267 | a.180.1 | N-terminal, cytoplasmic domain of anti-sigmaE factor RseA |
| View | Download | 0.265 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.265 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.263 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.260 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.260 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.253 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.245 | d.91.1 | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 |
| View | Download | 0.245 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.243 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.242 | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.241 | d.58.48 | MTH1187-like |
| View | Download | 0.240 | a.17.1 | p8-MTCP1 |
| View | Download | 0.237 | a.4.1 | Homeodomain-like |
| View | Download | 0.235 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.234 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.233 | a.3.1 | Cytochrome c |
| View | Download | 0.228 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.226 | a.64.1 | Saposin |
| View | Download | 0.223 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.223 | a.2.7 | tRNA-binding arm |
| View | Download | 0.217 | a.26.1 | 4-helical cytokines |
| View | Download | 0.217 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.217 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.214 | a.4.1 | Homeodomain-like |
| View | Download | 0.214 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.211 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.210 | a.2.3 | Chaperone J-domain |
| View | Download | 0.205 | d.58.17 | Metal-binding domain |
| View | Download | 0.204 | a.112.1 | Description not found. |
| View | Download | 0.202 | a.3.1 | Cytochrome c |
| View | Download | 0.200 | c.9.1 | Barstar (barnase inhibitor) |
