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View Structure Prediction Details

Protein: MRP20
Organism: Saccharomyces cerevisiae
Length: 263 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRP20.

Description E-value Query
Range
Subject
Range
MRP20 - Mitochondrial ribosomal protein of the large subunit
gi|190404659 - gi|190404659|gb|EDV07926.1| 60S ribosomal protein L41, mitochondrial precursor [Saccharomyces cerevi...
gi|207346333 - gi|207346333|gb|EDZ72858.1| YDR405Wp-like protein [Saccharomyces cerevisiae AWRI1631]
RM41_YEAST - 54S ribosomal protein L41, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
gi|151942378 - gi|151942378|gb|EDN60734.1| YmL41 [Saccharomyces cerevisiae YJM789]
4.0E-94 [1..263] [1..263]
RM23_RAT - 39S ribosomal protein L23, mitochondrial OS=Rattus norvegicus GN=Mrpl23 PE=2 SV=1
9.0E-26 [69..209] [2..139]
RM23_MOUSE - 39S ribosomal protein L23, mitochondrial OS=Mus musculus GN=Mrpl23 PE=1 SV=1
2.0E-25 [69..209] [2..139]
gi|48478716, gi|... - gi|48478750|ref|YP_024358.1| ribosomal protein L23 [Saccharum hybrid cultivar SP-80-3280], gi|484787...
RK23_MAIZE - 50S ribosomal protein L23, chloroplastic OS=Zea mays GN=rpl23-A PE=3 SV=1
RK23_SACOF - 50S ribosomal protein L23, chloroplastic OS=Saccharum officinarum GN=rpl23-A PE=3 SV=1
RK23B_SORBI - 50S ribosomal protein L23-B, chloroplastic OS=Sorghum bicolor GN=rpl23-B PE=3 SV=1
RK23_SACHY - 50S ribosomal protein L23, chloroplastic OS=Saccharum hybrid GN=rpl23-A PE=3 SV=1
2.0E-24 [84..175] [4..90]
gi|710569, gi|710565 - gi|710569|gb|AAD15253.1| ribosomal protein L23 [Oryza sativa], gi|710565|gb|AAA84593.1| ribosomal pr...
5.0E-24 [84..175] [4..90]
gi|15829057 - gi|15829057|ref|NP_326417.1| 50S ribosomal protein L23 [Mycoplasma pulmonis UAB CTIP]
gi|25394580, gi|... - pir||B90585 50S ribosomal protein L23 [imported] - Mycoplasma pulmonis (strain UAB CTIP), gi|140900...
5.0E-23 [88..207] [8..121]
gi|134286971, gi... - gi|139390219|ref|YP_001123791.1| ribosomal protein L23 [Lobularia maritima], gi|139390194|ref|YP_001...
gi|139389992, gi... - gi|139390015|ref|YP_001123614.1| ribosomal protein L23 [Draba nemorosa], gi|139389992|ref|YP_0011235...
gi|134286705, gi... - gi|139389868|ref|YP_001123528.1| ribosomal protein L23 [Crucihimalaya wallichii], gi|139389843|ref|Y...
gi|134286439, gi... - gi|139389707|ref|YP_001123263.1| ribosomal protein L23 [Arabis hirsuta], gi|139389684|ref|YP_0011232...
gi|134286354, gi... - gi|139389481|ref|YP_001123177.1| ribosomal protein L23 [Olimarabidopsis pumila], gi|139389460|ref|YP...
RK23_SINAL - 50S ribosomal protein L23, chloroplastic OS=Sinapis alba GN=rpl23 PE=3 SV=1
gi|134287061, gi... - gi|139389161|ref|YP_001123878.1| ribosomal protein L23 [Nasturtium officinale], gi|139389138|ref|YP_...
gi|139388952, gi... - gi|139388977|ref|YP_001123703.1| ribosomal protein L23 [Lepidium virginicum], gi|139388952|ref|YP_00...
RK23_ARATH - 50S ribosomal protein L23, chloroplastic OS=Arabidopsis thaliana GN=rpl23-A PE=3 SV=1
gi|139387294, gi... - gi|139387319|ref|YP_001123439.1| ribosomal protein L23 [Capsella bursa-pastoris], gi|139387294|ref|Y...
4.0E-22 [84..171] [4..86]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
7.0E-22 [84..171] [4..86]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRLTVGTKN MLYPLQKTLA VGSCKPEQVP IRSLASVVES SSKILDKSGS DREVDINVSE  60
   61 KIYKWTKAGI EQGKEHFKVG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.545 a.7.6 Ribosomal protein S20
View Download 0.507 a.118.1 ARM repeat
View Download 0.631 a.2.3 Chaperone J-domain
View Download 0.638 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.637 a.2.6 Effector domain of the protein kinase pkn/prk1
View Download 0.490 a.1.1 Globin-like
View Download 0.447 a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.445 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.444 f.17.1 F1F0 ATP synthase subunit C
View Download 0.428 a.133.1 Phospholipase A2, PLA2
View Download 0.424 a.156.1 S13-like H2TH domain
View Download 0.405 a.46.1 Methionine synthase domain
View Download 0.383 a.60.1 SAM/Pointed domain
View Download 0.348 a.57.1 Protein HNS-dependent expression A; HdeA
View Download 0.342 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.331 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.329 a.30.2 Homodimeric domain of signal transducing histidine kinase
View Download 0.325 a.37.1 A DNA-binding domain in eukaryotic transcription factors
View Download 0.308 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.303 a.112.1 Description not found.
View Download 0.302 a.4.1 Homeodomain-like
View Download 0.295 a.47.2 t-snare proteins
View Download 0.294 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.293 a.26.1 4-helical cytokines
View Download 0.292 a.2.2 Ribosomal protein L29 (L29p)
View Download 0.292 a.8.2 Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
View Download 0.286 a.16.1 S15/NS1 RNA-binding domain
View Download 0.271 f.34.1 Mechanosensitive channel protein MscS (YggB), transmembrane region
View Download 0.255 a.24.4 Hemerythrin
View Download 0.254 a.4.5 "Winged helix" DNA-binding domain
View Download 0.244 a.5.3 N-terminal domain of phosphatidylinositol transfer protein sec14p
View Download 0.235 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.234 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.233 a.61.1 Retroviral matrix proteins
View Download 0.231 a.38.1 Helix-loop-helix DNA-binding domain
View Download 0.227 a.2.8 Eukaryotic DNA topoisomerase I, dispensable insert domain
View Download 0.225 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.224 a.1.1 Globin-like
View Download 0.222 a.60.11 Hypothetical protein YjbJ
View Download 0.220 a.2.7 tRNA-binding arm
View Download 0.219 a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain
View Download 0.210 a.16.1 S15/NS1 RNA-binding domain
View Download 0.209 a.4.1 Homeodomain-like
View Download 0.208 d.15.7 Immunoglobulin-binding domains
View Download 0.205 a.60.3 C-terminal domain of RNA polymerase alpha subunit
View Download 0.204 d.109.1 Actin depolymerizing proteins
View Download 0.204 c.9.1 Barstar (barnase inhibitor)
View Download 0.202 b.40.4 Nucleic acid-binding proteins
View Download 0.200 a.54.1 Domain of early E2A DNA-binding protein, ADDBP

Predicted Domain #2
Region A:
Residues: [81-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNKVYFPKAR IILLRPNAKH TPYQAKFIVP KSFNKLDLRD YLYHIYGLRA MNITTQLLHG  60
   61 KFNRMNLQTT RFREPQIKKM TIEMEEPFIW PEEPRPDENS FW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.09691
Match: 1lnrR_
Description: No description for 1lnrR_ was found.

Predicted Domain #3
Region A:
Residues: [183-263]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSTTPDNMEK YREERLNCLG SDANKPGTAF DGVVGPYERV AQPFIPRFLK REIDNKRERH  60
   61 AAELQRADKL IALNRYIEDL H

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.682 a.7.7 BAG domain
View Download 0.527 a.7.8 GAT domain
View Download 0.583 a.12.1 Kix domain of CBP (creb binding protein)
View Download 0.566 d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.504 d.56.1 GroEL-intermediate domain like
View Download 0.492 a.46.1 Methionine synthase domain
View Download 0.471 a.47.2 t-snare proteins
View Download 0.453 a.133.1 Phospholipase A2, PLA2
View Download 0.423 a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.417 d.58.20 NAD-binding domain of HMG-CoA reductase
View Download 0.408 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.383 d.58.49 YajQ-like
View Download 0.375 a.4.5 "Winged helix" DNA-binding domain
View Download 0.368 a.164.1 C-terminal domain of DFF45/ICAD (DFF-C domain)
View Download 0.368 a.4.7 Ribosomal protein L11, C-terminal domain
View Download 0.361 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.355 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.353 a.28.1 ACP-like
View Download 0.341 d.58.10 Acylphosphatase-like
View Download 0.339 f.34.1 Mechanosensitive channel protein MscS (YggB), transmembrane region
View Download 0.321 a.118.1 ARM repeat
View Download 0.320 a.5.3 N-terminal domain of phosphatidylinositol transfer protein sec14p
View Download 0.316 a.2.3 Chaperone J-domain
View Download 0.310 a.2.3 Chaperone J-domain
View Download 0.308 d.58.48 MTH1187-like
View Download 0.300 a.24.17 Group V grass pollen allergen
View Download 0.300 a.28.1 ACP-like
View Download 0.294 a.130.1 Chorismate mutase II
View Download 0.291 a.77.1 DEATH domain
View Download 0.286 a.159.1 Protein serine/threonine phosphatase 2C, C-terminal domain
View Download 0.282 a.42.1 MDM2
View Download 0.276 d.49.1 Signal recognition particle alu RNA binding heterodimer, SRP9/14
View Download 0.275 a.83.1 Guanido kinase N-terminal domain
View Download 0.267 a.3.1 Cytochrome c
View Download 0.267 a.180.1 N-terminal, cytoplasmic domain of anti-sigmaE factor RseA
View Download 0.265 a.29.4 RecG, N-terminal domain
View Download 0.265 d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.263 a.156.1 S13-like H2TH domain
View Download 0.260 d.52.3 Prokaryotic type KH domain (KH-domain type II)
View Download 0.260 a.4.5 "Winged helix" DNA-binding domain
View Download 0.253 a.156.1 S13-like H2TH domain
View Download 0.245 d.91.1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
View Download 0.245 a.60.1 SAM/Pointed domain
View Download 0.243 a.60.11 Hypothetical protein YjbJ
View Download 0.242 d.58.3 Protease propeptides/inhibitors
View Download 0.241 d.58.48 MTH1187-like
View Download 0.240 a.17.1 p8-MTCP1
View Download 0.237 a.4.1 Homeodomain-like
View Download 0.235 a.4.5 "Winged helix" DNA-binding domain
View Download 0.234 d.80.1 Tautomerase/MIF
View Download 0.233 a.3.1 Cytochrome c
View Download 0.228 a.7.6 Ribosomal protein S20
View Download 0.226 a.64.1 Saposin
View Download 0.223 d.58.11 EF-G/eEF-2 domains III and V
View Download 0.223 a.2.7 tRNA-binding arm
View Download 0.217 a.26.1 4-helical cytokines
View Download 0.217 a.8.2 Plasmid maintenance system epsilon/zeta, antidote epsilon subunit
View Download 0.217 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.214 a.4.1 Homeodomain-like
View Download 0.214 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.211 a.4.5 "Winged helix" DNA-binding domain
View Download 0.210 a.2.3 Chaperone J-domain
View Download 0.205 d.58.17 Metal-binding domain
View Download 0.204 a.112.1 Description not found.
View Download 0.202 a.3.1 Cytochrome c
View Download 0.200 c.9.1 Barstar (barnase inhibitor)


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle