Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR333C.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..713] | [1..713] |
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0.0 | [1..666] | [1..591] |
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0.0 | [1..666] | [1..591] |
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0.0 | [1..670] | [12..571] |
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0.0 | [116..663] | [22..567] |
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0.0 | [274..663] | [89..454] |
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8.0E-98 | [57..490] | [122..511] |
|
Region A: Residues: [1-298] |
1 11 21 31 41 51
| | | | | |
1 MSSRALRRLQ DDNALLESLL SNSNANKMTS GKSTAGNIQK RENIFSMMNN VRDSDNSTDE 60
61 GQMSEQDEEA AAAGERDTQS NGQPKRITLA SKSSRRKKNK KAKRKQKNHT AEAAKDKGSD 120
121 DDDDDEEFDK IIQQFKKTDI LKYGKTKNDD TNEEGFFTAS EPEEASSQPW KSFLSLESDP 180
181 GFTKFPISCL RHSCKFFQND FKKLDPHTEF KLLFDDISPE SLEDIDSMTS TPVSPQQLKQ 240
241 IQRLKRLIRN WGGKDHRLAP NGPGMHPQHL KFTKIRDDWI PTQRGELSMK LLSSDDLL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [299-353] |
1 11 21 31 41 51
| | | | | |
1 DWQLWERPLD WKDVIQNDVS QWQKFISFYK FEPLNSDLSK KSMMDFYLSV IVHPD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.718 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.711 | a.140.1 | LEM domain |
| View | Download | 0.780 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.733 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.711 | a.140.1 | LEM domain |
| View | Download | 0.679 | a.140.1 | LEM domain |
| View | Download | 0.657 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.657 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.582 | a.140.1 | LEM domain |
| View | Download | 0.491 | d.11.1 | Penicillin-binding protein 2x (pbp-2x), c-terminal domain |
| View | Download | 0.491 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.469 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.445 | a.30.1 | ROP protein |
| View | Download | 0.379 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.379 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.377 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.370 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.365 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.364 | a.4.1 | Homeodomain-like |
| View | Download | 0.346 | a.140.1 | LEM domain |
| View | Download | 0.331 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.318 | a.140.3 | Rho termination factor, N-terminal domain |
| View | Download | 0.318 | a.140.3 | Rho termination factor, N-terminal domain |
| View | Download | 0.318 | a.140.3 | Rho termination factor, N-terminal domain |
| View | Download | 0.317 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.301 | a.140.2 | SAP domain |
| View | Download | 0.289 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.281 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.277 | a.77.1 | DEATH domain |
| View | Download | 0.269 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.267 | a.140.2 | SAP domain |
| View | Download | 0.263 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.263 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.262 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.254 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.253 | a.7.7 | BAG domain |
| View | Download | 0.253 | g.58.1 | Pheromone ER-23 |
| View | Download | 0.252 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.250 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.249 | a.5.1 | DNA helicase RuvA subunit, C-terminal domain |
| View | Download | 0.244 | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.240 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.239 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.236 | a.2.7 | tRNA-binding arm |
| View | Download | 0.226 | d.11.1 | Penicillin-binding protein 2x (pbp-2x), c-terminal domain |
| View | Download | 0.223 | a.46.1 | Methionine synthase domain |
| View | Download | 0.223 | a.140.1 | LEM domain |
| View | Download | 0.221 | d.11.1 | Penicillin-binding protein 2x (pbp-2x), c-terminal domain |
| View | Download | 0.213 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.209 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.209 | a.140.1 | LEM domain |
| View | Download | 0.209 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.206 | a.164.1 | C-terminal domain of DFF45/ICAD (DFF-C domain) |
| View | Download | 0.205 | a.77.1 | DEATH domain |
| View | Download | 0.203 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| Term | Confidence | Notes |
| binding | 2.00861212399414 | bayes_pls_golite062009 |
| protein binding | 1.51322932625387 | bayes_pls_golite062009 |
| transcription regulator activity | 0.92511049170437 | bayes_pls_golite062009 |
| nucleic acid binding | 0.777329345097548 | bayes_pls_golite062009 |
| DNA binding | 0.67447901722682 | bayes_pls_golite062009 |
|
Region A: Residues: [354-477] |
1 11 21 31 41 51
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1 HEALINLISS KFPYHVPGLL QVALIFIRQG DRSNTNGLLQ RALFVFDRAL KANIIFDSLN 60
61 CQLPYIYFFN RQFYLAIFRY IQSLAQRGVI GTASEWTKVL WSLSPLEDPL GCRYFLDHYF 120
121 LLNN
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| Detection Method: | |
| Confidence: | 9.73 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [478-608] |
1 11 21 31 41 51
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1 DYQYIIELSN SPLMNCYKQW NTLGFSLAVV LSFLRINEMS SARNALLKAF KHHPLQLSEL 60
61 FKEKLLGDHA LTKDLSIDGH SAENLELKAY MARFPLLWNR NEEVTFLHDE MSSILQDYHR 120
121 GNVTIDSNDG Q
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| Detection Method: | |
| Confidence: | 9.73 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
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Region A: Residues: [609-723] |
1 11 21 31 41 51
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1 DHNNINNLQS PFFIAGIPIN LLRFAILSEE SSVMAAIPSF IWSDNEVYEF DVLPPMPTSK 60
61 ESIEVVENIK TFINEKDLAV LQAERMQDED LLNQIRQISL QQYIHENEES NENEG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.282 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.315 | a.22.1 | Histone-fold |
| View | Download | 0.473 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.277 | a.118.8 | TPR-like |
| View | Download | 0.258 | a.74.1 | Cyclin-like |
| View | Download | 0.258 | a.26.1 | 4-helical cytokines |
| View | Download | 0.249 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.243 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.241 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.234 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.229 | d.203.1 | DsrC, the gamma subunit of dissimilatory sulfite reductase |
| View | Download | 0.201 | a.133.1 | Phospholipase A2, PLA2 |
