| Protein: | UBX5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 500 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBX5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..500] | [1..500] |
|
|
0.0 | [5..488] | [10..507] |
|
|
0.0 | [4..495] | [6..465] |
|
|
1.0E-94 | [3..497] | [8..498] |
|
Region A: Residues: [1-202] |
1 11 21 31 41 51
| | | | | |
1 MSEGKVDEFM AITGADDAAI ATQFIEMADG NLNTAISLFF ENGGAALLSS NNTPTPSNST 60
61 PMAPTSVDSD ADAQLAERLQ REAYQQQQPD QDYVRPPDEA RHEVLTETSG FPISYGGIGG 120
121 RFEPLHRVND MFDEGRPESI FNQRLDDTNT NTYINDNSSD SLDSEEENDD DEYEYVEEPV 180
181 IELDEDGNIK EYTKLVRKPK TI
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.347 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.272 | a.1.1 | Globin-like |
| View | Download | 0.265 | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.203 | d.164.1 | SMAD MH1 domain |
|
Region A: Residues: [203-354] |
1 11 21 31 41 51
| | | | | |
1 SKEQKLALLF RPPFSIMSKL DLDAAKQKAR AKQKWIMINI QDSGIFQCQA LNRDLWSSRP 60
61 VKTIIKENFV FLQYQYESRN AQPYLQFYHL NNKDDLPHIA ILDPITGERV KQWNRVVPIP 120
121 EQFISEINEF LASFSLDPKV PNPTVNEPLP KV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [355-500] |
1 11 21 31 41 51
| | | | | |
1 DPTTLTEEQQ MELAIKESLN NNSSKSNQEE VPSTGEEQKR VQEPDPFSTI EARVHPEPPN 60
61 KPGITTRIQI RTGDGSRLVR RFNALEDTVR TIYEVIKTEM DGFADSRFTL NDHQREDLID 120
121 KLNMTIADAG LKNSSLLLEK LDPEIE
|
| Detection Method: | |
| Confidence: | 19.221849 |
| Match: | 1jruA_ |
| Description: | p47 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.672192331361968 | bayes_pls_golite062009 |
| binding | 0.665189138843282 | bayes_pls_golite062009 |
| hydrolase activity | 0.150237022038507 | bayes_pls_golite062009 |
| transcription regulator activity | 0.13699526678272 | bayes_pls_golite062009 |
|
Region A: Residues: [383-500] |
1 11 21 31 41 51
| | | | | |
1 EEVPSTGEEQ KRVQEPDPFS TIEARVHPEP PNKPGITTRI QIRTGDGSRL VRRFNALEDT 60
61 VRTIYEVIKT EMDGFADSRF TLNDHQREDL IDKLNMTIAD AGLKNSSLLL EKLDPEIE
|
| Detection Method: | |
| Confidence: | 20.39794 |
| Match: | 1s3sG |
| Description: | Crystal structure of AAA ATPase p97/VCP ND1 in complex with p47 C |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.19381585790185 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.83465130904364 | bayes_pls_golite062009 |
| protein binding | 1.17197911794381 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.16468510691469 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.919595189902044 | bayes_pls_golite062009 |
| nucleic acid binding | 0.383121378043805 | bayes_pls_golite062009 |
| hydrolase activity | 0.247201449341942 | bayes_pls_golite062009 |
| DNA binding | 0.0840213088061073 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0485636215870291 | bayes_pls_golite062009 |
