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View Structure Prediction Details

Protein: YDR261C-C
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR261C-C.

Description E-value Query
Range
Subject
Range
YNL054W-B - TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are req...
YN12B_YEAST - Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
633.0 [0..1] [438..1]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [179-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDFPNWVKTY IKFLQNSNLG GIIPTVNGKP VRQITDDELT FLYNTFQIFA PSQFLPTWVK  60
   61 DILSVDYTDI MKILSKSIEK MQSDTQEAND IVTLANLQYN GSTPADAFET KVTNIIDRLN 120
  121 NNGIHINNKV ACQLIMRGLS GEYKFLRYTR HRHLNMTVAE LFLDIHAIYE EQQGSRNSKP 180
  181 NYRRNPSDEK NDSRSYT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [376-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTTKPKVIAR NPQKTNNSKS KTARAHNVST SNNSPSTDND SISKSTTEPI QLNNKHDLHL  60
   61 RPETY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.33
Match: 2ihxA
Description: No description for 2ihxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle