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View Structure Prediction Details

Protein: YDR261C-C
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR261C-C.

Description E-value Query
Range
Subject
Range
YNL054W-B - TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are req...
YN12B_YEAST - Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T...
633.0 [0..1] [438..1]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESQQLSQHS PISHGSACAS VTSKEVHTNQ DPLDVSASKT EECEKASTKA NSQQTTTPAS  60
   61 SAVPENPHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120
  121 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [179-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDFPNWVKTY IKFLQNSNLG GIIPTVNGKP VRQITDDELT FLYNTFQIFA PSQFLPTWVK  60
   61 DILSVDYTDI MKILSKSIEK MQSDTQEAND IVTLANLQYN GSTPADAFET KVTNIIDRLN 120
  121 NNGIHINNKV ACQLIMRGLS GEYKFLRYTR HRHLNMTVAE LFLDIHAIYE EQQGSRNSKP 180
  181 NYRRNPSDEK NDSRSYT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [376-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTTKPKVIAR NPQKTNNSKS KTARAHNVST SNNSPSTDND SISKSTTEPI QLNNKHDLHL  60
   61 RPETY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.33
Match: 2ihxA
Description: No description for 2ihxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle