| Protein: | GTB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 702 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GTB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..702] | [1..702] |
|
|
2.0E-53 | [444..682] | [131..377] |
|
|
6.0E-51 | [444..683] | [259..513] |
|
|
1.0E-47 | [491..690] | [63..247] |
|
Region A: Residues: [1-276] |
1 11 21 31 41 51
| | | | | |
1 MVSMFSLFLL LIEQSPLVAS LQQSQRHIVG VPWEKQHLYD SNEPDLTKWH CLNHEDIVLD 60
61 ISQINDGVCD CPDGSDEPGS AACVEDIFKS VAEGGGKVNK YFYCDNKGFI PRYIRKSEVA 120
121 DGICDCCDCS DELLSGYELF DAGSNCSQLK NEFDIMASKE LSSYREGKEA LEELERKYGT 180
181 KEEAITRGNC LEEDKEKASA EIKVLSNRLS ENRAKLEQLR GEYFNQLSHD PILYQFEQLN 240
241 STRLGSDILT SFTMVSRVSK GYQDIFKILS DLSEAY
|
| Detection Method: |  |
| Confidence: | 21.522879 |
| Match: | 1jv2B_ |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [277-434] |
1 11 21 31 41 51
| | | | | |
1 TPSLNDKVVN DNIKKFRKVR RRAEKAKINA DSKIDDEQAD NLYLYFTEEV PQIFLKRESE 60
61 NTLRYVIGKS NFVQALVEGK INYTNDILEY IREFRLIMDD ISQNYNVNFQ DAGVKSAVDS 120
121 YKNYLGEYGE LAELEPAHPS ESLLRSLSEV TSFVNENA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [435-560] |
1 11 21 31 41 51
| | | | | |
1 PKVLPPDAVE SEQDTNSDHI GTSGDLRNKL KEILSKLNIF SSRKDLVSLE KRFRSCESQV 60
61 SLLENELKQK MDYKKLLDET EDEGTNSTAG NLTELLELMG SQSYCLDDIL DNYVYTICFQ 120
121 RPMTEG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.16931544864195 | bayes_pls_golite062009 |
| protein binding | 0.872890850602389 | bayes_pls_golite062009 |
| protein kinase activity | 0.583206284003708 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.508369072880209 | bayes_pls_golite062009 |
| kinase activity | 0.391568627986248 | bayes_pls_golite062009 |
| catalytic activity | 0.282237710666423 | bayes_pls_golite062009 |
| monosaccharide binding | 0.210030780379333 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.181223198260708 | bayes_pls_golite062009 |
|
Region A: Residues: [561-702] |
1 11 21 31 41 51
| | | | | |
1 VIYQAEDKVD GKKVLIGRFK TSGFNVDLNM EKYAEHLKAT YDEKSDLISN LAAIQDDDGN 60
61 MQHYVFGNLN ELNNGLVLEY ENGDQCWNGP RRSATVFVRC SDKFKIRSVH EATKCNYIFD 120
121 VVGPLGCNKT FEYEPPKFNL SE
|
| Detection Method: | |
| Confidence: | 7.88 |
| Match: | 1keoA |
| Description: | Cation-dependent mannose 6-phosphate receptor, extracytoplasmic domain |
Matching Structure (courtesy of the PDB): |
|
