YRC Public Data Repository - Protein Structure Prediction

Protein:	UME6
Organism:	Saccharomyces cerevisiae
Length:	836 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UME6.

Description	E-value	Query Range	Subject Range
gi\|479019 - gi\|479019\|gb\|AAA34471.1\| car80 [Saccharomyces cerevisiae]	1151.0	[0..1]	[836..1]
gi\|44985768 - gi\|44985768\|gb\|AAS54392.1\| AGL099Cp [Ashbya gossypii ATCC 10895] gi\|44985768, gi\|... - gi\|45200998\|ref\|NP_986568.1\| AGL099Cp [Ashbya gossypii ATCC 10895], gi\|44985768\|gb\|AAS54392.1\| AGL09...	143.0	[0..194]	[836..170]
XLNR_ASPFN - Xylanolytic transcriptional activator xlnR OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / ... XLNR_ASPOR - Xylanolytic transcriptional activator xlnR OS=Aspergillus oryzae GN=xlnR PE=1 SV=2 XLNR_ASPOR - Xylanolytic transcriptional activator xlnR OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=xln...	128.0	[0..661]	[814..19]
gi\|7493819, gi\|3... - pir\|\|T14913 CAT8 protein - yeast (Kluyveromyces marxianus var. lactis), gi\|49642267\|emb\|CAH00229.1\|... gi\|50306319, gi\|... - gi\|50306319\|ref\|XP_453133.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642267\|emb\|CAH0022...	125.0	[0..652]	[832..50]
gi\|49525510 - gi\|49525510\|emb\|CAG59127.1\| unnamed protein product [Candida glabrata] gi\|49525510, gi\|... - gi\|50287547\|ref\|XP_446203.1\| unnamed protein product [Candida glabrata], gi\|49525510\|emb\|CAG59127.1\|...	121.0	[0..480]	[836..230]
gi\|1470090 - gi\|1470090\|gb\|AAB05250.1\| negative acting factor	116.0	[0..651]	[809..163]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDKARSQSK HMDESNAAAS LLSMETTANN HHYLHNKTSR ATLMNSSQDG KKHAEDEVSD  60
   61 GANSRHPTIS SASIESLKTT YDENPLLSIM KSTCAPNNTP VHTPSGSPSL KVQSGGDIKD 120
  121 DPKENDTTTT TNTTLQDRRD SDNAVHAAAS PLAPSNTPSD PKSLCNGHVA QATDPQISGA 180
  181 IQPQYTATNE DVFPYSSTST NSNTATTTIV AGAKKKIHLP PPQAPAVSSP GTTAAGSGAG 240
  241 TGSGIRSRTG S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [252-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLPLIITSAN KNNGKTTNSP MSILSRNNST NNNDNNSIQS SDSRESSNNN EIGGYLRGGT  60
   61 KRGGSPSNDS QVQHNVHDDQ CAVGVAPRNF YFNKDREITD PNVKLDENES KINISFWLNS 120
  121 KYRDEAYSLN ESSSNNASSN TDTPTNSRHA NTSSSITSRN NFQHFRFNQI PSQPPTSASS 180
  181 FTSTNNNNPQ RNNINRGEDP FATSSRPSTG FFYGDLPNRN NRNSPFHTNE QY

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	14.37
Match:
Description:	No description for 1je5A was found.

Predicted Domain #3

Region A:
Residues: [484-619]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPPPPPKYIN SKLDGLRSRL LLGPNSASSS TKLDDDLGTA AAVLSNMRSS PYRTHDKPIS  60
   61 NVNDMNNTNA LGVPASRPHS SSFPSKGVLR PILLRIHNSE QQPIFESNNS TAVFDEDQDQ 120
  121 NQDLSPYHLN LNSKKV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [620-759]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDPTFESRTR QVTWNKNGKR IDRRLSAPEQ QQQLEVPPLK KSRRSVGNAR VASQTNSDYN  60
   61 SLGESSTSSA PSSPSLKASS GLAYTADYPN ATSPDFAKSK GKNVKPKAKS KAKQSSKKRP 120
  121 NNTTSKSKAN NSQESNNATS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [760-836]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSQGTRSRT GCWICRLRKK KCTEERPHCF NCERLKLDCH YDAFKPDFVS DPKKKQMKLE  60
   61 EIKKKTKEAK RRAMKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.917458
Match:	1qp9A
Description:	Hap1 (Cyp1); HAP1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits