| Protein: | APC4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 652 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APC4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..652] | [1..652] |
|
Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MSSPINDYFI DYNPLFPIFA TRIAKGLAIY RVSDHARLAV IPIRNINLVA NYDWDTTTGK 60
61 FLSIFFKDGT IRIHDIFKDG RLVSFLRIPS TKISKGIWDR IPLRYEPNNR DFACNIIDDL 120
121 PKLIRFVKDS KRINIVPYTQ PNSLWRGPDE DDLDS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [156-395] |
1 11 21 31 41 51
| | | | | |
1 NEKLDVHVVF NEGNDKITVF FNGDYAVFLS VDNIENENSL KSIIKVQDGF YQCFYEDGTV 60
61 QTLNLGPLLQ SKSSVNLLNY IMVIKELIGY MLTHLEFINR ELATPYLDFV KRLCDEAYGY 120
121 GKLKSELEAL FLLGEISCDL EDWLCNSVGE KNFKRWKYLG CEAYQKTVQI LTLIFVPACE 180
181 RIIIYVEKLR AILQAFSIQN KLSYTSDLTA VEVLLKSSQK LLTMTLNSII GLGRDETLFE 240
241
|
|
Region B: Residues: [436-521] |
1 11 21 31 41 51
| | | | | |
1 ILSKKGTEPS SIIDVKLYRD LINSMSDMEK DIAQSNVNSH IQQHILVDLK TDVFAQKYPS 60
61 SQINLLDAIK LPKHNYIVYL IQVTKH
|
| Detection Method: | |
| Confidence: | 7.39 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [396-435] |
1 11 21 31 41 51
| | | | | |
1 KFFIWFNDRL HEALDEDYKL KFQFEDDLYF GYDLLSYFDR
|
| Detection Method: | |
| Confidence: | 7.39 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [522-652] |
1 11 21 31 41 51
| | | | | |
1 NSAQEPFSEE NKKKLYIGTL KDENLGIISK ESSVKIPALF KSYRLSSTRF VPNRVHSLLR 60
61 DIGLSDSNYH SSHVTDYRGE NYENEEDDGT IAIPAYIREN RENDDFIACT AKVSVDGRSA 120
121 SLVFPKEKQN V
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
