| Protein: | APC4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 652 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APC4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..652] | [1..652] |
|
Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MSSPINDYFI DYNPLFPIFA TRIAKGLAIY RVSDHARLAV IPIRNINLVA NYDWDTTTGK 60
61 FLSIFFKDGT IRIHDIFKDG RLVSFLRIPS TKISKGIWDR IPLRYEPNNR DFACNIIDDL 120
121 PKLIRFVKDS KRINIVPYTQ PNSLWRGPDE DDLDS
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [156-395] |
1 11 21 31 41 51
| | | | | |
1 NEKLDVHVVF NEGNDKITVF FNGDYAVFLS VDNIENENSL KSIIKVQDGF YQCFYEDGTV 60
61 QTLNLGPLLQ SKSSVNLLNY IMVIKELIGY MLTHLEFINR ELATPYLDFV KRLCDEAYGY 120
121 GKLKSELEAL FLLGEISCDL EDWLCNSVGE KNFKRWKYLG CEAYQKTVQI LTLIFVPACE 180
181 RIIIYVEKLR AILQAFSIQN KLSYTSDLTA VEVLLKSSQK LLTMTLNSII GLGRDETLFE 240
241
|
|
Region B: Residues: [436-521] |
1 11 21 31 41 51
| | | | | |
1 ILSKKGTEPS SIIDVKLYRD LINSMSDMEK DIAQSNVNSH IQQHILVDLK TDVFAQKYPS 60
61 SQINLLDAIK LPKHNYIVYL IQVTKH
|
| Detection Method: | |
| Confidence: | 7.39 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [396-435] |
1 11 21 31 41 51
| | | | | |
1 KFFIWFNDRL HEALDEDYKL KFQFEDDLYF GYDLLSYFDR
|
| Detection Method: | |
| Confidence: | 7.39 |
| Match: | 1qoyA |
| Description: | Hemolysin E (HlyE, ClyA, SheA) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [522-652] |
1 11 21 31 41 51
| | | | | |
1 NSAQEPFSEE NKKKLYIGTL KDENLGIISK ESSVKIPALF KSYRLSSTRF VPNRVHSLLR 60
61 DIGLSDSNYH SSHVTDYRGE NYENEEDDGT IAIPAYIREN RENDDFIACT AKVSVDGRSA 120
121 SLVFPKEKQN V
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.322 | c.55.3 | Ribonuclease H-like |
| View | Download | 0.397 | a.77.1 | DEATH domain |
| View | Download | 0.378 | a.118.8 | TPR-like |
| View | Download | 0.382 | c.95.1 | Thiolase-like |
| View | Download | 0.304 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.298 | a.118.8 | TPR-like |
| View | Download | 0.289 | a.1.1 | Globin-like |
| View | Download | 0.282 | c.55.6 | DNA repair protein MutS, domain II |
| View | Download | 0.257 | c.25.1 | Ferredoxin reductase-like, C-terminal NADP-linked domain |
| View | Download | 0.253 | d.15.2 | CAD & PB1 domains |
| View | Download | 0.250 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.238 | c.95.1 | Thiolase-like |
| View | Download | 0.210 | d.79.2 | Tubulin/Dihydroxyacetone kinase C-terminal domain |
| View | Download | 0.200 | d.58.22 | TRADD, N-terminal domain |
