| Protein: | TMS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 473 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..473] | [1..473] |
|
|
0.0 | [1..466] | [1..470] |
|
|
0.0 | [1..466] | [1..450] |
|
|
0.0 | [1..466] | [5..454] |
|
|
0.0 | [1..466] | [1..462] |
|
Region A: Residues: [1-473] |
1 11 21 31 41 51
| | | | | |
1 MGAVISLPVS MAGSFVASCF GGCCSNLVTK TASSLGSSSL GTRLLYAVWL LLNSLISWVS 60
61 YSANKSILWP GKTCTGTGEC GFFTVHRLNF ALGCLHLILA LVLTGVKSTN DVRAALQNSW 120
121 WSLKFILYLC LIVLSFVIPN DFYIFFSKWV SVPSGAIFIL VGLILLVDFA HEWAETCISH 180
181 VESEDEDSSF WQRFLVLGTT SMYTASIIMT VVMYVMFCHQ QCNMNQTAVT VNLILTVITL 240
241 VLSVNPKIQE ANPKSGLAQS SMVSVYCTYL TMSAMSSEPD DKMCNPLVRS SGTRKFSIIL 300
301 GSLFTFIAIA YTTTRAAANS AFQGTNTNGA IYLGNDIEYE GLGGQTRNQL RYEAIKQAVE 360
361 EGSLPESALY DTAWLGTSSP TGAMDNQNDD ERTGTKYNYT LFHVIFFLAT QWIAILLTIN 420
421 VTQDDVGDFI PVGRTYFYSW VKIVSAWICY ALYGWTVVAP AIMPDRFDYE NYY
|
| Detection Method: |  |
| Confidence: | 283.387216 |
| Match: | PF03348 |
| Description: | TMS membrane protein/tumour differentially expressed protein (TDE) |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
