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View Structure Prediction Details

Protein: SLU7
Organism: Saccharomyces cerevisiae
Length: 382 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLU7.

Description E-value Query
Range
Subject
Range
SLU7_YEAST - Pre-mRNA-splicing factor SLU7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLU7 PE=1 ...
SLU7 - RNA splicing factor, required for ATP-independent portion of 2nd catalytic step of spliceosomal RNA ...
0.0 [1..382] [1..382]
gi|25404941, gi|... - gi|6686410|gb|AAF23844.1|AC007234_16 F1E22.4 [Arabidopsis thaliana], pir||E96681 protein F1E22.4 [im...
0.0 [5..371] [10..357]
gi|123980268, gi... - gi|123995081|gb|ABM85142.1| step II splicing factor SLU7 [synthetic construct], gi|123980268|gb|ABM8...
gi|14714952 - gi|14714952|gb|AAH10634.1| SLU7 splicing factor homolog (S. cerevisiae) [Homo sapiens]
0.0 [7..365] [29..378]
CE06116 - Zinc finger, CCHC class status:Confirmed UniProt:Q21278 protein_id:CAA94899.1
1.0E-92 [19..366] [33..355]
gi|16769598 - gi|16769598|gb|AAL29018.1| LD43674p [Drosophila melanogaster]
6.0E-92 [6..365] [29..349]
slu7 - splicing factor Slu7
SLU7_SCHPO - Pre-mRNA-splicing factor slu7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slu7 PE=1 SV...
2.0E-87 [1..374] [4..339]

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Predicted Domain #1
Region A:
Residues: [1-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNSRNNEN RSTINRNKRQ LQQAKEKNEN IHIPRYIRNQ PWYYKDTPKE QEGKKPGNDD  60
   61 TSTAEGGEKS DYLVHHRQKA KGGALDIDNN SEPKIGMGIK DEFKLIRPQK MSVRDSHSLS 120
  121 FCRNCGEAGH KEKDCMEKPR KMQKLVPDLN SQKNNGTVLV RATDDDWDSR KDRW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [175-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGYSGKEYNE LISKWERDKR NKIKGKDKSQ TDETLWDTDE EIELMKLELY KDSVGSLKKD  60
   61 DADNSQLYRT STRLREDKAA YLNDINSTES NYDPKSRLYK TETLGAVDEK SKMFRRHLTG 120
  121 EGLKLNELNQ FARSHAKEMG IRDEIEDKEK VQHVLVANPT KYEYLKKKRE QEETKQPKIV 180
  181 SIGDLEARKV DGTKQSEEQR NHLKDLYG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [167-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WDSRKDRWYG YSGKEYNELI SKWERDKRNK IKGKDKSQTD ETLWDTDEEI ELMKLELYKD  60
   61 SVGSLKKDDA DNSQLYRTST RLREDKAAYL NDINSTESNY DPKSRLYKTE TLGAVDEKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [286-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMFRRHLTGE GLKLNELNQF ARSHAKEMGI RDEIEDKEKV QHVLVANPTK YEYLKKKREQ  60
   61 EETKQPKIVS IGDLEARKVD GTKQSEEQRN HLKDLYG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle