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Protein Overview: CE06116

General Information:
Name(s) found: CE06116 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00010629 Pre-mRNA-splicing factor SLU7 status:Confirmed UniProt:Q21278 protein_id:CAA94899.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 647 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: molting cycle, protein-based cuticle [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASYKQNLPP SALIKQQVNV ADKKSKAEVQ RDRQLEEDRK AGTAPAMVDV QTGRDINPHI  60
   61 PMFISQNPWY VPSEGPTLKH QRPHEEREKK MTQIHEWYQK GTTGKSATKF RKGACENCGA 120
  121 MGHQKRDCFD RPRKSNAKET NDNIAEDDYV QPNLTLGFDA KRDRWNGYDP STHKQVIEDY 180
  181 EHLEEARKVV REHEMKEGEV EPATTEDGAP KDEDMYAEDA DMAGVSVDMD SRTRITVRNL 240
  241 RIREDTAKYL YNLAENSPYY DPKSRSMREN PFAGVAGKEL EAARFSGDNF VRYSGEVTAA 300
  301 NEAQVFAWQA TRGGVYAHSI AEPTKLEALK KEYEKEKSTL KNETQKELLD KYGGGEHMER 360
  361 PADELLLAQT ESYIEYNRKG KVIKGKEKVA ISSRFKEDIY PQNHTSVFGS FWREGRWGYK 420
  421 CCHQFVKNSY CTGKQGIEAE TSAAKGTTTS NEEIFKVPKL VEKTEVKEEK EKEDSIKDEV 480
  481 AEENSDNDND EEKEKVSEKS ISPSPPSDDE EKEKEREKER LIEKERRERD QRRRDKKREK 540
  541 RERKKAKLGK RKRRHRDSDD ESDPSSGSGS ESDSDEEMRK AMKKAKREKA EGMKAAREGD 600
  601 RGRKYNTDYS NTAPNEKEME AYRVTSVHSA DPMAAYMNSK FEKKHTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..145] FFAS03 1.15 HIV nucleocapsid
    2 View Details [146..276] deduced N/A No confident structure predictions are available.
    3 View Details [277..647] PSI-BLAST 10.39794 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle