| Protein: | CE06116 |
| Organism: | Caenorhabditis elegans |
| Length: | 647 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06116.
| Description | E-value | Query Range |
Subject Range |
|
|
300.0 | [0..24] | [464..32] |
|
Region A: Residues: [1-145] |
1 11 21 31 41 51
| | | | | |
1 MASYKQNLPP SALIKQQVNV ADKKSKAEVQ RDRQLEEDRK AGTAPAMVDV QTGRDINPHI 60
61 PMFISQNPWY VPSEGPTLKH QRPHEEREKK MTQIHEWYQK GTTGKSATKF RKGACENCGA 120
121 MGHQKRDCFD RPRKSNAKET NDNIA
|
| Detection Method: |  |
| Confidence: | 1.15 |
| Match: | 1a1tA |
| Description: | HIV nucleocapsid |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [146-276] |
1 11 21 31 41 51
| | | | | |
1 EDDYVQPNLT LGFDAKRDRW NGYDPSTHKQ VIEDYEHLEE ARKVVREHEM KEGEVEPATT 60
61 EDGAPKDEDM YAEDADMAGV SVDMDSRTRI TVRNLRIRED TAKYLYNLAE NSPYYDPKSR 120
121 SMRENPFAGV A
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [277-647] |
1 11 21 31 41 51
| | | | | |
1 GKELEAARFS GDNFVRYSGE VTAANEAQVF AWQATRGGVY AHSIAEPTKL EALKKEYEKE 60
61 KSTLKNETQK ELLDKYGGGE HMERPADELL LAQTESYIEY NRKGKVIKGK EKVAISSRFK 120
121 EDIYPQNHTS VFGSFWREGR WGYKCCHQFV KNSYCTGKQG IEAETSAAKG TTTSNEEIFK 180
181 VPKLVEKTEV KEEKEKEDSI KDEVAEENSD NDNDEEKEKV SEKSISPSPP SDDEEKEKER 240
241 EKERLIEKER RERDQRRRDK KREKRERKKA KLGKRKRRHR DSDDESDPSS GSGSESDSDE 300
301 EMRKAMKKAK REKAEGMKAA REGDRGRKYN TDYSNTAPNE KEMEAYRVTS VHSADPMAAY 360
361 MNSKFEKKHT K
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
