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View Structure Prediction Details

Protein: SLU7
Organism: Saccharomyces cerevisiae
Length: 382 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLU7.

Description E-value Query
Range
Subject
Range
SLU7_YEAST - Pre-mRNA-splicing factor SLU7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLU7 PE=1 ...
SLU7 - RNA splicing factor, required for ATP-independent portion of 2nd catalytic step of spliceosomal RNA ...
0.0 [1..382] [1..382]
gi|25404941, gi|... - gi|6686410|gb|AAF23844.1|AC007234_16 F1E22.4 [Arabidopsis thaliana], pir||E96681 protein F1E22.4 [im...
0.0 [5..371] [10..357]
gi|123980268, gi... - gi|123995081|gb|ABM85142.1| step II splicing factor SLU7 [synthetic construct], gi|123980268|gb|ABM8...
gi|14714952 - gi|14714952|gb|AAH10634.1| SLU7 splicing factor homolog (S. cerevisiae) [Homo sapiens]
0.0 [7..365] [29..378]
CE06116 - Zinc finger, CCHC class status:Confirmed UniProt:Q21278 protein_id:CAA94899.1
1.0E-92 [19..366] [33..355]
gi|16769598 - gi|16769598|gb|AAL29018.1| LD43674p [Drosophila melanogaster]
6.0E-92 [6..365] [29..349]
slu7 - splicing factor Slu7
SLU7_SCHPO - Pre-mRNA-splicing factor slu7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slu7 PE=1 SV...
2.0E-87 [1..374] [4..339]

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Predicted Domain #1
Region A:
Residues: [1-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNSRNNEN RSTINRNKRQ LQQAKEKNEN IHIPRYIRNQ PWYYKDTPKE QEGKKPGNDD  60
   61 TSTAEGGEKS DYLVHHRQKA KGGALDIDNN SEPKIGMGIK DEFKLIRPQK MSVRDSHSLS 120
  121 FCRNCGEAGH KEKDCMEKPR KMQKLVPDLN SQKNNGTVLV RATDDDWDSR KDRW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [175-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGYSGKEYNE LISKWERDKR NKIKGKDKSQ TDETLWDTDE EIELMKLELY KDSVGSLKKD  60
   61 DADNSQLYRT STRLREDKAA YLNDINSTES NYDPKSRLYK TETLGAVDEK SKMFRRHLTG 120
  121 EGLKLNELNQ FARSHAKEMG IRDEIEDKEK VQHVLVANPT KYEYLKKKRE QEETKQPKIV 180
  181 SIGDLEARKV DGTKQSEEQR NHLKDLYG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [167-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WDSRKDRWYG YSGKEYNELI SKWERDKRNK IKGKDKSQTD ETLWDTDEEI ELMKLELYKD  60
   61 SVGSLKKDDA DNSQLYRTST RLREDKAAYL NDINSTESNY DPKSRLYKTE TLGAVDEKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [286-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMFRRHLTGE GLKLNELNQF ARSHAKEMGI RDEIEDKEKV QHVLVANPTK YEYLKKKREQ  60
   61 EETKQPKIVS IGDLEARKVD GTKQSEEQRN HLKDLYG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle