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View Structure Prediction Details

Protein: RRP8
Organism: Saccharomyces cerevisiae
Length: 402 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP8.

Description E-value Query
Range		 Subject
Range
gi|577810 - gi|577810|emb|CAA86805.1| unknown [Saccharomyces cerevisiae]
gi|151942073 - gi|151942073|gb|EDN60429.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 0.0 [1..398] [1..398]
gi|2662099 - gi|2662099|dbj|BAA23705.1| KIAA0409 [Homo sapiens]
 2.0E-77 [26..393] [116..464]
RRP8_MOUSE - Ribosomal RNA-processing protein 8 OS=Mus musculus GN=Rrp8 PE=1 SV=1
 2.0E-75 [26..393] [108..457]
rrp8 - rRNA methyltransferase Rrp8
RRP8_SCHPO - 25S rRNA (adenine(645)-N(1))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...
 3.0E-61 [40..393] [10..318]
CE17217 - status:Partially_confirmed UniProt:O44410 protein_id:AAK39280.1
 2.0E-60 [25..393] [24..343]
gi|9758079 - gi|9758079|dbj|BAB08523.1| unnamed protein product [Arabidopsis thaliana]
 5.0E-59 [40..393] [4..310]
gi|19074689, gi|... - gi|19074689|ref|NP_586195.1| similarity to HYPOTHETICAL PROTEIN YD29_SCHPO [Encephalitozoon cuniculi...
gi|19074689 - ref|NP_586195.1| similarity to HYPOTHETICAL PROTEIN YD29_SCHPO [Encephalitozoon cuniculi]
 3.0E-36 [131..393] [2..210]
UBIE_PASMU - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Pasteurella multocida GN=ubiE PE=3 SV=...
UBIE_PASMU - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pasteurella multocida (strain Pm70) ...
 2.0E-33 [106..363] [10..233]

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Predicted Domain #1
Region A:
Residues: [1-127] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHILYIYYIK QIRTLTKFYM ALFNVEGWSI KTKTVAFDNK TNKSSKDKKK NNRKNGKLTR  60
   61 EQKLKEETEA ELKEQVEDIP SEGSVAKDIP KKNQEKSDQN ETSKKRKHDE EAPLMQVKEN 120
  121 IEKPTKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [128-191] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLTPLQQKMM AKLTGSRFRW INEQLYTISS DEALKLIKEQ PQLFDEYHDG FRSQVQAWPE  60
   61 NPVD

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [324-402] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSDGKGNEFV DALKLMGFFH KKTFDENKMF TRFEFFKPPA EIIEERRQKL ERRQKFIEVE  60
   61 TEKEELEKKR RKIAEENGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.39794
Match: 1ic3A_
Description: No description for 1ic3A_ was found.

Predicted Domain #3
Region A:
Residues: [192-323] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFVDQIRYRC MKPVNAPGGL PGLKDSKEIV IADMGCGEAQ LALEINNFFK NYNKKAKKYL  60
   61 KRRHKVHSFD LKKANERITV ADIRNVPLPD ESCTIVVFCL ALMGTNFLDF IKEAYRILAP 120
  121 RGELWIAEIK SR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.39794
Match: 1ic3A_
Description: No description for 1ic3A_ was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle