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View Structure Prediction Details

Protein: RRP8
Organism: Saccharomyces cerevisiae
Length: 402 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRP8.

Description E-value Query
Range		 Subject
Range
gi|577810 - gi|577810|emb|CAA86805.1| unknown [Saccharomyces cerevisiae]
gi|151942073 - gi|151942073|gb|EDN60429.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
 0.0 [1..398] [1..398]
gi|2662099 - gi|2662099|dbj|BAA23705.1| KIAA0409 [Homo sapiens]
 2.0E-77 [26..393] [116..464]
RRP8_MOUSE - Ribosomal RNA-processing protein 8 OS=Mus musculus GN=Rrp8 PE=1 SV=1
 2.0E-75 [26..393] [108..457]
rrp8 - rRNA methyltransferase Rrp8
RRP8_SCHPO - 25S rRNA (adenine(645)-N(1))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...
 3.0E-61 [40..393] [10..318]
CE17217 - status:Partially_confirmed UniProt:O44410 protein_id:AAK39280.1
 2.0E-60 [25..393] [24..343]
gi|9758079 - gi|9758079|dbj|BAB08523.1| unnamed protein product [Arabidopsis thaliana]
 5.0E-59 [40..393] [4..310]
gi|19074689, gi|... - gi|19074689|ref|NP_586195.1| similarity to HYPOTHETICAL PROTEIN YD29_SCHPO [Encephalitozoon cuniculi...
gi|19074689 - ref|NP_586195.1| similarity to HYPOTHETICAL PROTEIN YD29_SCHPO [Encephalitozoon cuniculi]
 3.0E-36 [131..393] [2..210]
UBIE_PASMU - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Pasteurella multocida GN=ubiE PE=3 SV=...
UBIE_PASMU - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pasteurella multocida (strain Pm70) ...
 2.0E-33 [106..363] [10..233]

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Predicted Domain #1
Region A:
Residues: [1-127] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHILYIYYIK QIRTLTKFYM ALFNVEGWSI KTKTVAFDNK TNKSSKDKKK NNRKNGKLTR  60
   61 EQKLKEETEA ELKEQVEDIP SEGSVAKDIP KKNQEKSDQN ETSKKRKHDE EAPLMQVKEN 120
  121 IEKPTKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [128-191] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLTPLQQKMM AKLTGSRFRW INEQLYTISS DEALKLIKEQ PQLFDEYHDG FRSQVQAWPE  60
   61 NPVD

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [324-402] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSDGKGNEFV DALKLMGFFH KKTFDENKMF TRFEFFKPPA EIIEERRQKL ERRQKFIEVE  60
   61 TEKEELEKKR RKIAEENGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.39794
Match: 1ic3A_
Description: No description for 1ic3A_ was found.

Predicted Domain #3
Region A:
Residues: [192-323] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFVDQIRYRC MKPVNAPGGL PGLKDSKEIV IADMGCGEAQ LALEINNFFK NYNKKAKKYL  60
   61 KRRHKVHSFD LKKANERITV ADIRNVPLPD ESCTIVVFCL ALMGTNFLDF IKEAYRILAP 120
  121 RGELWIAEIK SR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.39794
Match: 1ic3A_
Description: No description for 1ic3A_ was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle