YRC Public Data Repository - Protein Structure Prediction

Protein:	SNF11
Organism:	Saccharomyces cerevisiae
Length:	169 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF11.

Description	E-value	Query Range	Subject Range
gi\|44986081, gi\|... - gi\|45201227\|ref\|NP_986797.1\| AGR131Wp [Ashbya gossypii ATCC 10895], gi\|44986081\|gb\|AAS54621.1\| AGR13... gi\|44986081 - gi\|44986081\|gb\|AAS54621.1\| AGR131Wp [Ashbya gossypii ATCC 10895]	81.0	[0..63]	[168..35]
gi\|49643543\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50308807, gi\|... - gi\|50308807\|ref\|XP_454408.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643543\|emb\|CAG9949...	67.0	[0..60]	[169..20]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEIAYSNT NTNTENENRN TGAGVDVNTN ANANANATAN ATANATANAT AELNLPTVDE  60
   61 QRQYKVQLLL HINSILLARV IQMNNSLQNN LQNNINNSNN NNIIRIQQLI SQFLKRVHAN 120
  121 LQCISQINQG VPSAKPLILT PPQLANQQQP PQDILSKLYL LLARVFEIW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits