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View Structure Prediction Details

Protein: SNF11
Organism: Saccharomyces cerevisiae
Length: 169 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF11.

Description E-value Query
Range
Subject
Range
gi|44986081, gi|... - gi|45201227|ref|NP_986797.1| AGR131Wp [Ashbya gossypii ATCC 10895], gi|44986081|gb|AAS54621.1| AGR13...
gi|44986081 - gi|44986081|gb|AAS54621.1| AGR131Wp [Ashbya gossypii ATCC 10895]
81.0 [0..63] [168..35]
gi|49643543|emb|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
gi|50308807, gi|... - gi|50308807|ref|XP_454408.1| unnamed protein product [Kluyveromyces lactis], gi|49643543|emb|CAG9949...
67.0 [0..60] [169..20]

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Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEIAYSNT NTNTENENRN TGAGVDVNTN ANANANATAN ATANATANAT AELNLPTVDE  60
   61 QRQYKVQLLL HINSILLARV IQMNNSLQNN LQNNINNSNN NNIIRIQQLI SQFLKRVHAN 120
  121 LQCISQINQG VPSAKPLILT PPQLANQQQP PQDILSKLYL LLARVFEIW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.548 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.543 a.24.9 alpha-catenin/vinculin
View Download 0.505 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.496 f.25.1 Cytochrome c oxidase subunit III-like
View Download 0.496 f.25.1 Cytochrome c oxidase subunit III-like
View Download 0.474 a.24.9 alpha-catenin/vinculin
View Download 0.474 a.47.2 t-snare proteins
View Download 0.445 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.395 a.26.1 4-helical cytokines
View Download 0.390 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like
View Download 0.238 f.31.1 Photosystem I reaction center subunit XI, PsaL
View Download 0.216 a.25.1 Ferritin-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle