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View Structure Prediction Details

Protein: YDR018C
Organism: Saccharomyces cerevisiae
Length: 396 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDR018C.

Description E-value Query
Range		 Subject
Range
YD018_YEAST - Uncharacterized acyltransferase YDR018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
YDR018C - Probable membrane protein with three predicted transmembrane domains; homologous to Ybr042cp, simila...
 4.0E-91 [1..396] [1..396]
LPAT2_BRANA - 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica napus GN=LPAT2 PE=2 SV=1
 5.0E-72 [21..388] [3..340]
LPAT2_ARATH - 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=2
 3.0E-70 [21..388] [3..340]
PLCD_RAT - 1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Rattus norvegicus GN=Agpat4 PE=2 SV=1
 1.0E-68 [22..379] [10..325]
AGPAT4 - 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
 6.0E-68 [22..383] [10..329]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 3.0E-63 [23..390] [6..343]
CG4729-PB, CG472... - This gene is referred to in FlyBase by the symbol Dmel\CG4729 (CG4729, FBgn0036623). It is a protein...
gi|220958652 - gi|220958652|gb|ACL91869.1| CG4729-PA [synthetic construct]
 2.0E-61 [15..380] [1..337]

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Predicted Domain #1
Region A:
Residues: [1-102] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHSQKYRRY GIYEKTGNPF IKGLQRLLIA CLFISGSLSI VVFQICLQVL LPWSKIRFQN  60
   61 GINQSKKAFI VLLCMILNMV APSSLNVTFE TSRPLKNSSN AK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score		 SCOP
Match		 SCOP Description
View Download 0.911 a.74.1 Cyclin-like

Predicted Domain #2
Region A:
Residues: [103-247] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PCFRFKDRAI IIANHQMYAD WIYLWWLSFV SNLGGNVYII LKKALQYIPL LGFGMRNFKF  60
   61 IFLSRNWQKD EKALTNSLVS MDLNARCKGP LTNYKSCYSK TNESIAAYNL IMFPEGTNLS 120
  121 LKTREKSEAF CQRAHLDHVQ LRHLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.221849
Match: 1k30A_
Description: Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [248-396] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPHSKGLKFA VEKLAPSLDA IYDVTIGYSP ALRTEYVGTK FTLKKIFLMG VYPEKVDFYI  60
   61 REFRVNEIPL QDDEVFFNWL LGVWKEKDQL LEDYYNTGQF KSNAKNDNQS IVVTTQTTGF 120
  121 QHETLTPRIL SYYGFFAFLI LVFVMKKNH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle