| Protein: | CMR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 522 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CMR1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [9..520] | [766..1255] |
|
|
0.0 | [53..519] | [1082..1487] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MPELTEFQKK RLENIKRNND LLKKLHLSGV ASQIKHEAGV LEKSRAPAKK KQKTTNTRAT 60
61 KSASPTLPTR RSRRLRGESA DDVKGIPNVN DNQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [94-522] |
1 11 21 31 41 51
| | | | | |
1 LLKMGSPDGQ DKNFIDAIKE KPVIGDVKLS DLIKDEDESA LLEKFKRFNN GNFSSGDFFE 60
61 EIKKRQGDVT GMDEFDLDLY DVFQPNEIKI TYERISATYF HPAMEKKLII AGDTSGTVGF 120
121 WNVRDEPLAD SEEDRMEEPD ITRVKLFTKN VGRIDCFPAD TSKILLTSYD GSIRSVHLNN 180
181 LQSEEVLTLK NEYDDSLGIS DCQFSYENPN VLFLTTLGGE FTTFDTRVKK SEYNLRRLAD 240
241 KKIGSMAINP MRPYEIATGS LDRTLKIWDT RNLVKKPEWS QYEDYPSHEI VSTYDSRLSV 300
301 SAVSYSPTDG TLVCNGYDDT IRLFDVKSRD HLSAKLEPKL TIQHNCQTGR WTSILKARFK 360
361 PNKNVFAIAN MKRAIDIYNS EGQQLAHLPT ATVPAVISWH PLRNWIAGGN SSGKIFLFTD 420
421 DSGTIKQEE
|
| Detection Method: | |
| Confidence: | 70.221849 |
| Match: | 1erjA_ |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.83286470399158 | bayes_pls_golite062009 |
| nucleic acid binding | 1.2886835964948 | bayes_pls_golite062009 |
| transcription regulator activity | 1.0160811807475 | bayes_pls_golite062009 |
| DNA binding | 0.561578774129549 | bayes_pls_golite062009 |
| protein binding | 0.522364360354028 | bayes_pls_golite062009 |
| transcription factor activity | 0.00445255815744083 | bayes_pls_golite062009 |
