| Protein: | RGT2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 763 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGT2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..763] | [1..763] |
|
|
0.0 | [84..761] | [3..714] |
|
|
0.0 | [56..615] | [16..570] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MNDSQNCLRQ REENSHLNPG NDFGHHQGAE CTINHNNMPH RNAYTESTND TEAKSIVMCD 60
61 DPNAYQISYT NN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.519 | d.68.3 | SirA-like |
| View | Download | 0.530 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.514 | d.58.49 | YajQ-like |
| View | Download | 0.491 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.530 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.519 | d.68.3 | SirA-like |
| View | Download | 0.514 | d.58.49 | YajQ-like |
| View | Download | 0.498 | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.491 | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.437 | b.5.1 | alpha-Amylase inhibitor tendamistat |
| View | Download | 0.421 | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.419 | d.58.5 | GlnB-like |
| View | Download | 0.366 | b.1.1 | Immunoglobulin |
| View | Download | 0.351 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.347 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.334 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.331 | b.11.1 | gamma-Crystallin-like |
| View | Download | 0.316 | d.95.2 | Homing endonucleases |
| View | Download | 0.306 | d.58.17 | Metal-binding domain |
| View | Download | 0.283 | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.273 | b.3.2 | Carboxypeptidase D, a regulatory domain |
| View | Download | 0.272 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.270 | d.95.1 | Glucose permease domain IIB |
| View | Download | 0.266 | d.19.1 | MHC antigen-recognition domain |
| View | Download | 0.240 | b.1.14 | Invasin/intimin cell-adhesion fragments |
| View | Download | 0.227 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.215 | d.34.1 | DNA-binding domain of Mlu1-box binding protein MBP1 |
|
Region A: Residues: [73-287] |
1 11 21 31 41 51
| | | | | |
1 EPAGDGAIET TSILLSQPLP LRSNVMSVLV GIFVAVGGFL FGYDTGLINS ITDMPYVKTY 60
61 IAPNHSYFTT SQIAILVSFL SLGTFFGALI APYISDSYGR KPTIMFSTAV IFSIGNSLQV 120
121 ASGGLVLLIV GRVISGIGIG IISAVVPLYQ AEAAQKNLRG AIISSYQWAI TIGLLVSSAV 180
181 SQGTHSKNGP SSYRIPIGLQ YVWSSILAVG MIFLP
|
|
Region B: Residues: [336-548] |
1 11 21 31 41 51
| | | | | |
1 FGPSTLLDCF KTSENRPKQI LRIFTGIAIQ AFQQASGINF IFYYGVNFFN NTGVDNSYLV 60
61 SFISYAVNVA FSIPGMYLVD RIGRRPVLLA GGVIMAIANL VIAIVGVSEG KTVVASKIMI 120
121 AFICLFIAAF SATWGGVVWV VSAELYPLGV RSKCTAICAA ANWLVNFTCA LITPYIVDVG 180
181 SHTSSMGPKI FFIWGGLNVV AVIVVYFAVY ETR
|
| Detection Method: | |
| Confidence: | 539.9897 |
| Match: | 1ja5A_ |
| Description: | No description for 1ja5A_ was found. |
| Term | Confidence | Notes |
| glycerol transmembrane transporter activity | 7.11654923455995 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 6.7545566917184 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 6.7545566917184 | bayes_pls_golite062009 |
| glycerol-3-phosphate transmembrane transporter activity | 5.74077413704789 | bayes_pls_golite062009 |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.54194478414824 | bayes_pls_golite062009 |
| hexose phosphate transmembrane transporter activity | 3.3746965264994 | bayes_pls_golite062009 |
| glucose-6-phosphate transmembrane transporter activity | 3.3746965264994 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 2.99050613058546 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 2.99050613058546 | bayes_pls_golite062009 |
| monosaccharide transmembrane transporter activity | 2.63293544825311 | bayes_pls_golite062009 |
| carbohydrate transmembrane transporter activity | 2.62141276633776 | bayes_pls_golite062009 |
| sugar transmembrane transporter activity | 2.47557586092261 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.21266150105753 | bayes_pls_golite062009 |
| solute:hydrogen symporter activity | 2.10485633822652 | bayes_pls_golite062009 |
| binding | 1.89539096965643 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.79369588808394 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| sugar binding | 0.285073104957756 | bayes_pls_golite062009 |
|
Region A: Residues: [288-335] |
1 11 21 31 41 51
| | | | | |
1 ESPRYYVLKD ELNKAAKSLS FLRGLPIEDP RLLEELVEIK ATYDYEAS
|
|
Region B: Residues: [549-619] |
1 11 21 31 41 51
| | | | | |
1 GLTLEEIDEL FRKAPNSVIS SKWNKKIRKR CLAFPISQQI EMKTNIKNAG KLDNNNSPIV 60
61 QDDSHNIIDV D
|
| Detection Method: | |
| Confidence: | 539.9897 |
| Match: | 1ja5A_ |
| Description: | No description for 1ja5A_ was found. |
|
Region A: Residues: [620-763] |
1 11 21 31 41 51
| | | | | |
1 GFLENQIQSN DHMIAADKGS GSLVNIIDTA PLTSTEFKPV EHPPVNYVDL GNGLGLNTYN 60
61 RGPPSIISDS TDEFYEENDS SYYNNNTERN GANSVNTYMA QLINSSSTTS NDTSFSPSHN 120
121 SNARTSSNWT SDLASKHSQY TSPQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.278 | b.42.4 | STI-like |
