| Protein: | UBP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 809 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..809] | [1..809] |
|
|
2.0E-79 | [99..740] | [295..908] |
|
|
1.0E-73 | [21..737] | [88..823] |
|
|
2.0E-69 | [16..737] | [81..821] |
|
|
4.0E-66 | [99..737] | [28..619] |
|
Region A: Residues: [1-81] |
1 11 21 31 41 51
| | | | | |
1 MDLFIESKIN SLLQFLFGSR QDFLRNFKTW SNNNNNLSIY LLIFGIVVFF YKKPDHLNYI 60
61 VESVSEMTTN FRNNNSLSRW L
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.928 | a.74.1 | Cyclin-like |
| View | Download | 0.923 | a.74.1 | Cyclin-like |
| View | Download | 0.918 | a.74.1 | Cyclin-like |
| View | Download | 0.905 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.889 | a.118.11 | Cytochrome c oxidase subunit E |
|
Region A: Residues: [82-147] |
1 11 21 31 41 51
| | | | | |
1 PRSKFTHLDE EILKRGGFIA GLVNDGNTCF MNSVLQSLAS SRELMEFLDN NVIRTYEEIE 60
61 QNEHNE
|
| Detection Method: | |
| Confidence: | 12.619789 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [148-519] |
1 11 21 31 41 51
| | | | | |
1 EGNGQESAQD EATHKKNTRK GGKVYGKHKK KLNRKSSSKE DEEKSQEPDI TFSVALRDLL 60
61 SALNAKYYRD KPYFKTNSLL KAMSKSPRKN ILLGYDQEDA QEFFQNILAE LESNVKSLNT 120
121 EKLDTTPVAK SELPDDALVG QLNLGEVGTV YIPTEQIDPN SILHDKSIQN FTPFKLMTPL 180
181 DGITAERIGC LQCGENGGIR YSVFSGLSLN LPNENIGSTL KLSQLLSDWS KPEIIEGVEC 240
241 NRCALTAAHS HLFGQLKEFE KKPEGSIPEK LINAVKDRVH QIEEVLAKPV IDDEDYKKLH 300
301 TANMVRKCSK SKQILISRPP PLLSIHINRS VFDPRTYMIR KNNSKVLFKS RLNLAPWCCD 360
361 INEINLDARL PM
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [520-673] |
1 11 21 31 41 51
| | | | | |
1 SKKEKAAQQD SSEDENIGGE YYTKLHERFE QEFEDSEEEK EYDDAEGNYA SHYNHTKDIS 60
61 NYDPLNGEVD GVTSDDEDEY IEETDALGNT IKKRIIEHSD VENENVKDNE ELQEIDNVSL 120
121 DEPKINVEDQ LETSSDEEDV IPAPPINYAR SFST
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [674-742] |
1 11 21 31 41 51
| | | | | |
1 VPATPLTYSL RSVIVHYGTH NYGHYIAFRK YRGCWWRISD ETVYVVDEAE VLSTPGVFML 60
61 FYEYDFDEE
|
| Detection Method: | |
| Confidence: | 22.119186 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [743-809] |
1 11 21 31 41 51
| | | | | |
1 TGKMKDDLEA IQSNNEEDDE KEQEQKGVQE PKESQEQGEG EEQEEGQEQM KFERTEDHRD 60
61 ISGKDVN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.241 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
