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View Structure Prediction Details

Protein: YDL063C
Organism: Saccharomyces cerevisiae
Length: 620 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDL063C.

Description E-value Query
Range
Subject
Range
YDL063C - Protein required for biogenesis of the large ribosomal subunit; green fluorescent protein (GFP)-fusi...
SYO1_YEAST - Synchronized import protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SYO1 PE=1 ...
gi|190405072 - gi|190405072|gb|EDV08339.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
0.0 [1..620] [1..620]
YGQ3_SCHPO - Uncharacterized ARM-like repeat-containing protein C1703.03c OS=Schizosaccharomyces pombe (strain 97...
SPBC1703.03c - armadillo repeat protein, unknown biological role
8.0E-75 [1..240] [1..231]
gi|15680144 - gi|15680144|gb|AAH14415.1| HEATR3 protein [Homo sapiens]
1.0E-74 [40..267] [89..296]

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Predicted Domain #1
Region A:
Residues: [1-203]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSKKRSRA SSSRLNPLRK AGSNDNNKDT NVVNKKLQPL LQNLSSVVPN DRSIALSSIS  60
   61 VLCEDAHMRQ LLLKEKLVPI ILNKLLNDSN SDIVVESFGL LRNLSLEEGY DVSIYLWRSD 120
  121 IWTSITSNFG RIVESLSALQ AAEQQPQLKP AGKSKIESKR LLFDFADNLL SLVVALSNGS 180
  181 DDILNEILTE SKINEIFQVI SQL

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.73
Match: 1qgkA
Description: Importin beta
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [204-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKYGVEKLPI NLFNTTLDLI YDLSSESFEF IDHVSNNELL SQFLNGLSPA LHPQANELTK  60
   61 VLIEGIHCQF LDMKITYDQC NKMIHSVCHS INNIDPVQLV NDINNPVEI

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.73
Match: 1qgkA
Description: Importin beta
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [313-620]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPATSKDESS KVITKIKDYN AKRNESMIKL QSIEIAIDLI TAIIEIVASK YESPESQEVA  60
   61 IPEELINTLT NFLPHVFMIL KDTFTSRILI GWNNLIWLFV SLSLTELSGE LLTTLWSYVT 120
  121 QLDSQDDLSI KIGRMGCIWA LLKLIFPDGA FESENRALIN VQMLNNSGFA RGIIEEFQNN 180
  181 NDLELQQKCI NVLSTYAMIQ GQIDANKEIG QFFIQTLTQL NVRPEILIEM TNSLFQIYGD 240
  241 ASYDYNEPIF VRGGFLSILK DQVVPNLRQQ FKMVDKNKNP ELKERCHDCF TTLDSFIHYK 300
  301 MNENSTNQ

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.73
Match: 1qgkA
Description: Importin beta
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle