YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RAD59
Organism: Saccharomyces cerevisiae
Length: 238 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAD59.

Description E-value Query
Range
Subject
Range
RAD59 - Protein involved in the repair of double-strand breaks in DNA during vegetative growth via recombina...
gi|190405069 - gi|190405069|gb|EDV08336.1| DNA repair protein RAD59 [Saccharomyces cerevisiae RM11-1a]
RAD59_YEAST - DNA repair protein RAD59 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD59 PE=1 SV=1
4.0E-99 [1..238] [1..238]
RAD59_KLULA, RA5... - DNA repair protein RAD59 OS=Kluyveromyces lactis GN=RAD59 PE=3 SV=1, (Q9HEU2) DNA repair protein RAD...
RAD59_KLULA - DNA repair protein RAD59 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 126...
1.0E-76 [9..213] [5..203]
gi|6755280, gi|1... - gi|6755280|ref|NP_035366.1| RAD52 homolog [Mus musculus], gi|458458|gb|AAA75441.1| homology to Swiss...
2.0E-70 [41..226] [30..197]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-70 [41..226] [30..197]
gi|6716781 - gi|6716781|gb|AAF26740.1|AF220495_1 Rad52 recombination protein [Cricetulus griseus]
1.0E-69 [41..226] [30..197]
RAD22_SCHPO - DNA repair and recombination protein rad22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...
rad22 - DNA repair protein Rad22
4.0E-67 [41..230] [19..198]

Back

Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIQAKPSSS ISYDSTTYGT APGLDIKEFQ IIEDWNGRPA SAWSVQRIGL LQSKIERYTY  60
   61 NIYHNNKYGK HNLSKLIPGH ALIQFANETF GYDGWRMDVI DVEARECQPF TAVNNGENTN 120
  121 TSEVKYTVVA EAQVKVTLKD GTNTQCGGLG RITLSSRGEC YNRSKKEAVG DAL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted functions:

Term Confidence Notes
binding 3.09705138687537 bayes_pls_golite062009
nucleic acid binding 2.62582371207063 bayes_pls_golite062009
RNA binding 1.51047378734681 bayes_pls_golite062009
protein binding 1.33336414936007 bayes_pls_golite062009
DNA binding 1.09648705416581 bayes_pls_golite062009
transcription regulator activity 0.558060375765317 bayes_pls_golite062009
double-stranded RNA binding 0.33006862628358 bayes_pls_golite062009
structure-specific DNA binding 0.109630981204183 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [174-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKALLSFEKI ILDYETKITN NYYVDGLYGS KKIKNEANTN YNLLSATNSK PTFIKLEDAK  60
   61 GTHIK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.819 0.036 DNA strand annealing activity b.40.4 Nucleic acid-binding proteins
View Download 0.728 0.036 DNA strand annealing activity d.9.1 Interleukin 8-like chemokines
View Download 0.825 0.036 DNA strand annealing activity d.50.1 dsRNA-binding domain-like
View Download 0.809 0.036 DNA strand annealing activity b.34.4 Electron transport accessory proteins
View Download 0.735 0.036 DNA strand annealing activity d.49.1 Signal recognition particle alu RNA binding heterodimer, SRP9/14
View Download 0.685 0.036 DNA strand annealing activity b.34.9 Tudor/PWWP/MBT
View Download 0.677 0.036 DNA strand annealing activity b.114.1 N-utilization substance G protein NusG, insert domain
View Download 0.677 0.036 DNA strand annealing activity g.18.1 Complement control module/SCR domain
View Download 0.648 0.036 DNA strand annealing activity b.71.1 Glycosyl hydrolase domain
View Download 0.643 0.036 DNA strand annealing activity b.38.2 YhbC-like, C-terminal domain
View Download 0.582 0.036 DNA strand annealing activity b.93.1 Epsilon subunit of F1F0-ATP synthase N-terminal domain
View Download 0.560 0.036 DNA strand annealing activity b.101.1 Ribonuclease domain of colicin E3
View Download 0.535 0.036 DNA strand annealing activity b.5.1 alpha-Amylase inhibitor tendamistat
View Download 0.532 0.036 DNA strand annealing activity d.50.1 dsRNA-binding domain-like
View Download 0.520 0.036 DNA strand annealing activity g.41.3 Zinc beta-ribbon
View Download 0.493 0.036 DNA strand annealing activity d.19.1 MHC antigen-recognition domain
View Download 0.479 0.036 DNA strand annealing activity b.11.1 gamma-Crystallin-like
View Download 0.473 0.036 DNA strand annealing activity b.1.1 Immunoglobulin
View Download 0.419 0.036 DNA strand annealing activity b.40.4 Nucleic acid-binding proteins
View Download 0.419 0.036 DNA strand annealing activity b.1.2 Fibronectin type III
View Download 0.414 0.036 DNA strand annealing activity d.15.2 CAD & PB1 domains
View Download 0.412 0.036 DNA strand annealing activity b.1.1 Immunoglobulin
View Download 0.409 0.036 DNA strand annealing activity d.19.1 MHC antigen-recognition domain
View Download 0.405 0.036 DNA strand annealing activity d.17.5 Uracil-DNA glycosylase inhibitor protein
View Download 0.394 0.036 DNA strand annealing activity b.55.1 PH domain-like
View Download 0.392 0.036 DNA strand annealing activity d.58.5 GlnB-like
View Download 0.391 0.036 DNA strand annealing activity d.129.1 TATA-box binding protein-like
View Download 0.383 0.036 DNA strand annealing activity d.58.2 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
View Download 0.378 0.036 DNA strand annealing activity g.27.1 Fibronectin type I module
View Download 0.370 0.036 DNA strand annealing activity d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.369 0.036 DNA strand annealing activity g.41.3 Zinc beta-ribbon
View Download 0.353 0.036 DNA strand annealing activity c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.343 0.036 DNA strand annealing activity g.37.1 C2H2 and C2HC zinc fingers
View Download 0.341 0.036 DNA strand annealing activity b.55.1 PH domain-like
View Download 0.321 0.036 DNA strand annealing activity d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.317 0.036 DNA strand annealing activity d.82.1 Copper amine oxidase, domain N
View Download 0.316 0.036 DNA strand annealing activity b.71.1 Glycosyl hydrolase domain
View Download 0.299 0.036 DNA strand annealing activity b.61.4 Quinohemoprotein amine dehydrogenase A chain, domain 3
View Download 0.299 0.036 DNA strand annealing activity d.15.1 Ubiquitin-like
View Download 0.298 0.036 DNA strand annealing activity d.17.1 Cystatin/monellin
View Download 0.288 0.036 DNA strand annealing activity b.40.4 Nucleic acid-binding proteins
View Download 0.277 0.036 DNA strand annealing activity d.129.2 Phosphoglucomutase, C-terminal domain
View Download 0.272 0.036 DNA strand annealing activity d.58.12 eEF-1beta-like
View Download 0.268 0.036 DNA strand annealing activity b.1.1 Immunoglobulin
View Download 0.263 0.036 DNA strand annealing activity b.61.4 Quinohemoprotein amine dehydrogenase A chain, domain 3
View Download 0.261 0.036 DNA strand annealing activity b.34.1 C-terminal domain of transcriptional repressors
View Download 0.254 0.036 DNA strand annealing activity b.61.3 D-aminopeptidase, middle and C-terminal domains
View Download 0.253 0.036 DNA strand annealing activity b.1.1 Immunoglobulin
View Download 0.250 0.036 DNA strand annealing activity b.1.1 Immunoglobulin
View Download 0.247 0.036 DNA strand annealing activity d.93.1 SH2 domain
View Download 0.244 0.036 DNA strand annealing activity d.200.1 Integrin beta tail domain
View Download 0.238 0.036 DNA strand annealing activity d.93.1 SH2 domain
View Download 0.238 0.036 DNA strand annealing activity d.93.1 SH2 domain
View Download 0.238 0.036 DNA strand annealing activity b.1.2 Fibronectin type III
View Download 0.226 0.036 DNA strand annealing activity d.129.1 TATA-box binding protein-like
View Download 0.218 0.036 DNA strand annealing activity d.233.1 Inhibitor of vertebrate lysozyme, Ivy
View Download 0.217 0.036 DNA strand annealing activity d.17.1 Cystatin/monellin
View Download 0.216 0.036 DNA strand annealing activity d.58.12 eEF-1beta-like
View Download 0.210 0.036 DNA strand annealing activity b.40.2 Bacterial enterotoxins
View Download 0.210 0.036 DNA strand annealing activity d.93.1 SH2 domain
View Download 0.210 0.036 DNA strand annealing activity c.30.1 PreATP-grasp domain
View Download 0.205 0.036 DNA strand annealing activity b.55.1 PH domain-like
View Download 0.204 0.036 DNA strand annealing activity b.1.2 Fibronectin type III
View Download 0.201 0.036 DNA strand annealing activity g.17.1 Cystine-knot cytokines


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle