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View Structure Prediction Details

Protein: DBP10
Organism: Saccharomyces cerevisiae
Length: 995 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DBP10.

Description E-value Query
Range
Subject
Range
DBP10_CANGA - ATP-dependent RNA helicase DBP10 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0...
DBP10_CANGA - ATP-dependent RNA helicase DBP10 OS=Candida glabrata GN=DBP10 PE=3 SV=1
863.0 [0..58] [995..48]
DBP10_KLULA - ATP-dependent RNA helicase DBP10 OS=Kluyveromyces lactis GN=DBP10 PE=3 SV=1
DBP10_KLULA - ATP-dependent RNA helicase DBP10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / ...
841.0 [0..16] [994..12]
DBP10_ASHGO - ATP-dependent RNA helicase DBP10 OS=Ashbya gossypii GN=DBP10 PE=3 SV=1
DBP10_ASHGO - ATP-dependent RNA helicase DBP10 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NR...
826.0 [0..1] [995..1]
gi|109496013 - gi|109496013|ref|XP_573400.2| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Rattu...
819.0 [0..59] [983..148]
gi|26327531 - gi|26327531|dbj|BAC27509.1| unnamed protein product [Mus musculus]
815.0 [0..60] [988..31]
gi|114647098 - gi|114647098|ref|XP_001152159.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 3 [Pan...
700.0 [0..64] [983..37]
gi|162319036 - gi|162319036|gb|AAI56670.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [synthetic construct]
DDX54 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
696.0 [0..64] [981..37]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVQKRKRD LEDQDDNGSE EDDIAFDIAN EIALNDSESD ANDSDSEVEA DYGPNDVQDV  60
   61 IEYSSDEEEG VNNKKKAENK DIKKKKNSKK EIAAFPMLE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDENNASG KTQTGDDEDD VNEYFSTNNL EKTKHKKGSF PSFGLSKIVL NNIKRKGFRQ  60
   61 PTPIQRKTIP LILQSRDIVG MARTGSGKTA AFILPMVEKL KSHSGKIGAR AVILSPSREL 120
  121 AMQTFNVFKD FARGTELRSV LLTGGDSLEE QFGMMMTNPD VIIATPGRFL HLKVEMNLDL 180
  181 KSVEYVVFDE ADRLFEMGFQ EQLNELLASL PTTRQTLLFS ATLPNSLVDF VKAGLVNPVL 240
  241 VRLDAETK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 419.9794
Match: 1hv8A
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [348-480]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSENLEMLFL SSKNADREAN LLYILQEIIK IPLATSEQLQ KLQNSNNEAD SDSDDENDRQ  60
   61 KKRRNFKKEK FRKQKMPAAN ELPSEKATIL FVPTRHHVEY ISQLLRDCGY LISYIYGTLD 120
  121 QHARKRQLYN FRA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 419.9794
Match: 1hv8A
Description: Putative DEAD box RNA helicase
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [481-577]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLTSILVVTD VAARGVDIPM LANVINYTLP GSSKIFVHRV GRTARAGNKG WAYSIVAENE  60
   61 LPYLLDLELF LGKKILLTPM YDSLVDVMKK RWIDEGK

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 13.84
Match:
Description: No description for 1gkuB was found.

Predicted Domain #5
Region A:
Residues: [578-665]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEYQFQPPKL SYTKRLVLGS CPRLDVEGLG DLYKNLMSSN FDLQLAKKTA MKAEKLYYRT  60
   61 RTSASPESLK RSKEIISSGW DAQNAFFG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.858 a.8.10 Description not found.

Predicted Domain #6
Region A:
Residues: [666-899]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNEEKEKLDF LAKLQNRRNK ETVFEFTRNP DDEMAVFMKR RRKQLAPIQR KATERRELLE  60
   61 KERMAGLHIL SKMKFWKGDD VETGYTVSED ALKEFEDAHQ LLEAQENENK KKKKPKSFKD 120
  121 PTFFLSHYAP AGDIQDKQLQ ITNGFANDAA QAAYDLNSDD KVQVHKQTAT VKWDKKRKKY 180
  181 VNTQGIDNKK YIIGESGQKI AASFRSGRFD DWSKARNLKP LKVGSRETSI PSNL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [900-995]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEDPSQGPAA NGRTVRGKFK HKQMKAPKMP DKHRDNYYSQ KKKVEKALQS GISVKGYNNA  60
   61 PGLRSELKST EQIRKDRIIA EKKRAKNARP SKKRKF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle