| Protein: | DBP10 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 995 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DBP10.
| Description | E-value | Query Range |
Subject Range |
|
|
863.0 | [0..58] | [995..48] |
|
|
841.0 | [0..16] | [994..12] |
|
|
826.0 | [0..1] | [995..1] |
|
|
819.0 | [0..59] | [983..148] |
|
|
815.0 | [0..60] | [988..31] |
|
|
700.0 | [0..64] | [983..37] |
|
|
696.0 | [0..64] | [981..37] |
|
Region A: Residues: [1-99] |
1 11 21 31 41 51
| | | | | |
1 MAGVQKRKRD LEDQDDNGSE EDDIAFDIAN EIALNDSESD ANDSDSEVEA DYGPNDVQDV 60
61 IEYSSDEEEG VNNKKKAENK DIKKKKNSKK EIAAFPMLE
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.476 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.476 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.323 | a.29.2 | Bromodomain |
| View | Download | 0.323 | a.29.2 | Bromodomain |
| View | Download | 0.300 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.300 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.293 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.268 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.209 | a.3.1 | Cytochrome c |
|
Region A: Residues: [100-347] |
1 11 21 31 41 51
| | | | | |
1 MSDDENNASG KTQTGDDEDD VNEYFSTNNL EKTKHKKGSF PSFGLSKIVL NNIKRKGFRQ 60
61 PTPIQRKTIP LILQSRDIVG MARTGSGKTA AFILPMVEKL KSHSGKIGAR AVILSPSREL 120
121 AMQTFNVFKD FARGTELRSV LLTGGDSLEE QFGMMMTNPD VIIATPGRFL HLKVEMNLDL 180
181 KSVEYVVFDE ADRLFEMGFQ EQLNELLASL PTTRQTLLFS ATLPNSLVDF VKAGLVNPVL 240
241 VRLDAETK
|
| Detection Method: | |
| Confidence: | 419.9794 |
| Match: | 1hv8A |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [348-480] |
1 11 21 31 41 51
| | | | | |
1 VSENLEMLFL SSKNADREAN LLYILQEIIK IPLATSEQLQ KLQNSNNEAD SDSDDENDRQ 60
61 KKRRNFKKEK FRKQKMPAAN ELPSEKATIL FVPTRHHVEY ISQLLRDCGY LISYIYGTLD 120
121 QHARKRQLYN FRA
|
| Detection Method: | |
| Confidence: | 419.9794 |
| Match: | 1hv8A |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [481-577] |
1 11 21 31 41 51
| | | | | |
1 GLTSILVVTD VAARGVDIPM LANVINYTLP GSSKIFVHRV GRTARAGNKG WAYSIVAENE 60
61 LPYLLDLELF LGKKILLTPM YDSLVDVMKK RWIDEGK
|
| Detection Method: | |
| Confidence: | 13.84 |
| Match: | |
| Description: | No description for 1gkuB was found. |
|
Region A: Residues: [578-665] |
1 11 21 31 41 51
| | | | | |
1 PEYQFQPPKL SYTKRLVLGS CPRLDVEGLG DLYKNLMSSN FDLQLAKKTA MKAEKLYYRT 60
61 RTSASPESLK RSKEIISSGW DAQNAFFG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.858 | a.8.10 | Description not found. |
| View | Download | 0.851 | a.29.14 | Description not found. |
| View | Download | 0.832 | a.47.2 | t-snare proteins |
| View | Download | 0.793 | a.29.14 | Description not found. |
| View | Download | 0.773 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.747 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.743 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.704 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.701 | a.112.1 | Description not found. |
|
Region A: Residues: [666-899] |
1 11 21 31 41 51
| | | | | |
1 KNEEKEKLDF LAKLQNRRNK ETVFEFTRNP DDEMAVFMKR RRKQLAPIQR KATERRELLE 60
61 KERMAGLHIL SKMKFWKGDD VETGYTVSED ALKEFEDAHQ LLEAQENENK KKKKPKSFKD 120
121 PTFFLSHYAP AGDIQDKQLQ ITNGFANDAA QAAYDLNSDD KVQVHKQTAT VKWDKKRKKY 180
181 VNTQGIDNKK YIIGESGQKI AASFRSGRFD DWSKARNLKP LKVGSRETSI PSNL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [900-995] |
1 11 21 31 41 51
| | | | | |
1 LEDPSQGPAA NGRTVRGKFK HKQMKAPKMP DKHRDNYYSQ KKKVEKALQS GISVKGYNNA 60
61 PGLRSELKST EQIRKDRIIA EKKRAKNARP SKKRKF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.724 | a.7.8 | GAT domain |
| View | Download | 0.563 | a.7.16 | Description not found. |
| View | Download | 0.540 | a.24.3 | Cytochromes |
| View | Download | 0.520 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.497 | a.47.2 | t-snare proteins |
| View | Download | 0.497 | a.47.2 | t-snare proteins |
| View | Download | 0.407 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.377 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.365 | a.7.8 | GAT domain |
