| Protein: | SED4 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1065 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SED4.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [2..617] | [937..1490] |
|
|
0.0 | [54..543] | [819..1277] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MSGNSANYDV GYPIYGAKFI NEGTLLVAGG GGQFNSSFPN KITALKVNFQ KKKHIRRFRE 60
61 ITLDSIDDAP TSLDCNNNLI LVGCNELFND SSM
|
| Detection Method: |  |
| Confidence: | 39.522879 |
| Match: | 1scgB_ |
| Description: | No description for 1scgB_ was found. |
|
Region A: Residues: [94-432] |
1 11 21 31 41 51
| | | | | |
1 ENVNHHLRKF VFEQEHLKFV ASIDFNRTTD PSVFTKFVYI NQRATVAAIA SSEVPTVIRI 60
61 IDPRNLTENY EIETGREVND LHFAPNGILL SYITSNSLEV ASVRDGNFVA RKTDFDKNLV 120
121 LSNIRFLNDN TLLVAASLSN SDGVSLLKLG VSSKGVKILK TASFMFDLNG ITSMDVSPNK 180
181 KFVALSSNDN LVAIVSVEKL KLVQLVPRVH ESTITKVTFS PDSRYLASTS MGNTINVLKL 240
241 SGTSSSILRN IWKFFLNFVL LVVLAGAIQL GYKHNVHGFI YKHAHDIYKS KFKENTTIDQ 300
301 GSSSYFTIND DYRGITESAD IISATDVASD IETEFSSFD
|
| Detection Method: | |
| Confidence: | 59.221849 |
| Match: | 1b9xA_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [433-728] |
1 11 21 31 41 51
| | | | | |
1 TSTMRTTTED EQKFVWISSS ADSQFTSADI PTSASSSSSS SSSSFYEESV TNEPIVSSPT 60
61 SEITKPLASP TEPNIVEKPS LPLNSESIDL LSSSSNSITE YPEPTPDLEE KLSSLIVEQS 120
121 ESEITTDRES VSKLLSTESP SLSHMPSSSS SSLSLSSSLT TSPTTALSTS TATAVTTTQT 180
181 NPTNDAANTS FLDNSKPAST REIYKTKIIT EVITKIEYRN IPASDSNAEA EQYVTTSSSM 240
241 LLTPTDTMVS SPVSEIDPIA SELERMVETP THSISIASEF DSVASNLIPN EEILST
|
| Detection Method: | |
| Confidence: | 13.88 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [729-926] |
1 11 21 31 41 51
| | | | | |
1 SASQDSISSH PSTFSDSSIT SGFQSIEVST VTSSVLASES IPSISDSTFS KFHSISEPVS 60
61 SAIVETATSS FSKTETKTSR VIAFSTEDSE RSSALIDNSE YTSVLADNLE PTSVLADNSE 120
121 PTSVLADSSE PTSVFTDAVQ SPKTSVGQSS LSESTNIEGT SMASMIFSSS GASIGALSDI 180
181 GKGTLSVESA SSTVAQPM
|
| Detection Method: | |
| Confidence: | 11.77 |
| Match: | 1deqA |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [927-1065] |
1 11 21 31 41 51
| | | | | |
1 PGVTTTAPSF VSSPHKISAS SIDASGFVQK EIMIEVQSSK DSSEAFGVRH KISENVNTPV 60
61 SRMLTTEMQA SGTVDVTEDV SLSSEVISAL NVEITSLPNP VAPPQTIAAP LNNNSNTNIV 120
121 NDDNAVAGTV NYAGLHDEL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.447 | 0.920 | ER to Golgi vesicle-mediated transport | a.118.8 | TPR-like |
|
Region A: Residues: [889-1065] |
1 11 21 31 41 51
| | | | | |
1 SMASMIFSSS GASIGALSDI GKGTLSVESA SSTVAQPMPG VTTTAPSFVS SPHKISASSI 60
61 DASGFVQKEI MIEVQSSKDS SEAFGVRHKI SENVNTPVSR MLTTEMQASG TVDVTEDVSL 120
121 SSEVISALNV EITSLPNPVA PPQTIAAPLN NNSNTNIVND DNAVAGTVNY AGLHDEL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
