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View Structure Prediction Details

Protein: CIT2
Organism: Saccharomyces cerevisiae
Length: 460 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIT2.

Description E-value Query
Range		 Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 0.0 [7..458] [22..473]
gi|14423562, gi|... - gi|30387583|gb|AAP31957.1| At2g44350 [Arabidopsis thaliana], gi|20197191|gb|AAC16084.2| citrate synt...
 0.0 [7..458] [21..472]
CISY_DAUCA - Citrate synthase, mitochondrial OS=Daucus carota GN=CS PE=2 SV=1
 0.0 [7..455] [21..470]
CISY_PIG - Citrate synthase, mitochondrial OS=Sus scrofa GN=CS PE=1 SV=2
gi|68227 - pir||YKPG citrate (si)-synthase (EC 4.1.3.7) precursor - pig
 0.0 [7..453] [14..461]
CISY_MOUSE - Citrate synthase, mitochondrial OS=Mus musculus GN=Cs PE=1 SV=1
 0.0 [7..453] [14..461]
CISY_RAT - Citrate synthase, mitochondrial OS=Rattus norvegicus GN=Cs PE=1 SV=1
 0.0 [7..453] [14..461]
gi|11066954 - gi|11066954|gb|AAG28777.1|AF302906_1 citrate synthase [Oryza sativa]
 0.0 [13..456] [27..470]
gi|15982952 - gi|15982952|gb|AAL11504.1|AF367444_1 citrate synthase [Prunus persica]
 0.0 [7..455] [21..469]
CISY_CITMA - Citrate synthase, mitochondrial OS=Citrus maxima GN=CIT PE=2 SV=1
 0.0 [7..455] [21..469]

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Predicted Domain #1
Region A:
Residues: [1-297] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVPYLNSNR NVASYLQSNS SQEKTLKERF SEIYPIHAQD VRQFVKEHGK TKISDVLLEQ  60
   61 VYGGMRGIPG SVWEGSVLDP EDGIRFRGRT IADIQKDLPK AKGSSQPLPE ALFWLLLTGE 120
  121 VPTQAQVENL SADLMSRSEL PSHVVQLLDN LPKDLHPMAQ FSIAVTALES ESKFAKAYAQ 180
  181 GISKQDYWSY TFEDSLDLLG KLPVIAAKIY RNVFKDGKMG EVDPNADYAK NLVNLIGSKD 240
  241 EDFVDLMRLY LTIHSDHEGG NVSAHTSHLV GSALSSPYLS LASGLNGLAG PLHGRAN

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [402-460] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYYGLKESSF YTVLFGVSRA FGILAQLITD RAIGASIERP KSYSTEKYKE LVKNIESKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1760.0
Match: 1cts__
Description: Citrate synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
citrate (Si)-synthase activity 7.90380661459876 bayes_pls_golite062009
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 7.35970609422108 bayes_pls_golite062009
transferase activity, transferring acyl groups 4.98392594633005 bayes_pls_golite062009
catalytic activity 2.51855037019879 bayes_pls_golite062009
transferase activity 1.52308910034898 bayes_pls_golite062009
binding 1.15467737113069 bayes_pls_golite062009
protein binding 0.210158634792359 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [298-401] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEVLEWLFAL KEEVNDDYSK DTIEKYLWDT LNSGRVIPGY GHAVLRKTDP RYMAQRKFAM  60
   61 DHFPDYELFK LVSSIYEVAP GVLTEHGKTK NPWPNVDAHS GVLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1760.0
Match: 1cts__
Description: Citrate synthase
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle