YRC Public Data Repository - Protein Structure Prediction

Protein:	PBN1
Organism:	Saccharomyces cerevisiae
Length:	416 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBN1.

Description	E-value	Query Range	Subject Range
PBN1_CANGA - Protein PBN1 OS=Candida glabrata GN=PBN1 PE=3 SV=1 PBN1_CANGA - Protein PBN1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=...	291.0	[0..4]	[416..5]
PBN1_KLULA - Protein PBN1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1... PBN1_KLULA - Protein PBN1 OS=Kluyveromyces lactis GN=PBN1 PE=3 SV=1	258.0	[0..4]	[404..15]
gi\|44985392 - gi\|44985392\|gb\|AAS54105.1\| AFR733Wp [Ashbya gossypii ATCC 10895] gi\|45199252, gi\|... - gi\|45199252\|ref\|NP_986281.1\| AFR733Wp [Ashbya gossypii ATCC 10895], gi\|44985392\|gb\|AAS54105.1\| AFR73...	253.0	[0..6]	[399..55]
SPCC1919.02 - pig-X PBN1_SCHPO - Protein pbn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pbn1 PE=3 SV=1	242.0	[0..222]	[377..132]
gi\|49656792, gi\|... - gi\|50425063\|ref\|XP_461123.1\| hypothetical protein DEHA0F18953g [Debaryomyces hansenii CBS767], gi\|49... PBN1_DEBHA - Protein PBN1 - Debaryomyces hansenii (Yeast) (Torulaspora hansenii)	119.0	[0..154]	[403..174]
PBN1_CANAL - Protein PBN1 OS=Candida albicans GN=PBN1 PE=3 SV=1 PBN1_CANAL - Protein PBN1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PBN1 PE=3 SV=1	107.0	[0..164]	[403..195]
PBN1_NEUCR - Protein pbn1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987... PBN1_NEUCR - Protein pbn-1 OS=Neurospora crassa GN=pbn-1 PE=3 SV=1	100.0	[0..224]	[405..269]
gi\|49089302, gi\|... - gi\|67523569\|ref\|XP_659844.1\| hypothetical protein AN2240.2 [Aspergillus nidulans FGSC A4], ref\|XP_40... PBN1_EMENI - Protein pbn1 OS=Emericella nidulans GN=pbn1 PE=3 SV=1	99.0	[0..148]	[403..121]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTRHRVTVL YNAPEDIGNH MRQNDTHLTV RGGSGVVLQQ RWLLERTGSL DKSFTRITWR  60
   61 PRADLARSLS VIENELSAGF SVYSNSSDVP ERFITNPVYN SFHSEKFDIE QYLPPEVDLN 120
  121 LSWNPEDFTY DISVEPTQIQ IVEYRLLKQG EEFTIARVKD EKLEVGVFFV DASD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-416]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESDVDIGGIR CNWRMDDGKM ERCQKTSLLY KQGHIAYNHS TTTTSLYLNE PIGLHPKIMI  60
   61 DLTDFEERPK CMYLMHLQLP LELFIDKFQS SPLLLFGEDD LELPEYSLRD KAWGSESIFE 120
  121 LKAGTMNEVT LHTRYIEPSN NKGDKLEVSF DPEVILACDT GDNKVSRNPF YKKGLGYESL 180
  181 FTDDTTFRHL NSTTLLVPIP RPDTKDYSKI KNGTLLCLLI SIIYIFSKVF GNNKKKRSVK 240
  241 RE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	101.920819
Match:	PF08320.3
Description:	No description for PF08320.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits