YRC Public Data Repository - Protein Structure Prediction

Protein:	GID7
Organism:	Saccharomyces cerevisiae
Length:	745 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GID7.

Description	E-value	Query Range	Subject Range
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	575.0	[0..84]	[743..743]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	560.0	[0..30]	[743..990]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	545.0	[0..207]	[740..157]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	545.0	[0..160]	[741..631]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	544.0	[0..98]	[741..459]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHTNKIAYV LNNDTEETAS PSSVGCFDKK QLTKLLIHTL KELGYDSAAN QLLLESGGYQ  60
   61 NESNHIQTFF KLIKTGQFHL INWQIVCSLP LAHSSPLRSE WLQRLLIPTP TPATTSLFDH 120
  121 MLLQLQYLQQ LMSSVNSSTC SDAEIATLRN YVEIMILVNR QIFLEFFHPV TNSASHK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [178-570]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPHTALPVLY LRKILKNFIE IWDSLLVSND QFLNEENIFN PETTLRELST YLTNPKLTAQ  60
   61 LNLERDHLID AISKYIDPNE LVPKGRLLHL LKQAIKYQQS QDIFNIIDPD DDASFSSPPH 120
  121 RINLLQDNFS HDLTVTFQEW KTIQDTTDEI WFLTFSPNGK YLASATSESS RGYFITVYDV 180
  181 EQDFKIYKTC VSLSQSVLYL MFSPDSRYLV ACPFSEDVTI YDMNATSLPD ASATDSFLLY 240
  241 PSTRLSPMDS FKLDTTTYPD DTESSASSSS RPANANSNQS RVWCCDAFHT AERAGWMVVG 300
  301 SPDREAIVHS LTTKESLFSL KGRTCIALGH DENISGRKSI DPAKVLYKPT SSNGNWQYVE 360
  361 DDETFPRVHD VKISYDDKYV LLMTHQGVID VYD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.045757
Match:	1gg2B
Description:	beta1-subunit of the signal-transducing G protein heterotrimer
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [571-745]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSGFPSKEEL SKQTVDPKNF LIPRIARLDV GKNMTCISLP LNTTHQGFHR QQISESQHLV  60
   61 LVSLQDNELQ MWDYKENILI QKYFGQKQQH FIIRSCFAYG NKLVMSGSED GKIYIWDRIR 120
  121 GNLVSVLSGH STVMSNSTKP MGKNCNVVAS NPADKEMFAS GGDDGKIKIW KISRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.39794
Match:	1erjA
Description:	Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits